CK933906
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB1_CALJA (High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12 Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447 DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y + Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB1_BOVIN (High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3) HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12 Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447 DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y + Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB1_PIG (High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12 Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447 DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y + Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYRAK 165
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB2_RAT (High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12 Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447 DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y + Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB2_PIG (High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12 Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447 DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y + Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB2_HUMAN (High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12 Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447 DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y + Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB2_BOVIN (High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12 Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447 DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y + Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB2_CHICK (High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12 Identity = 36/76 (47.37%), Postives = 42/76 (55.26%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447 DPN PKRP SAFF+F E R + K DHP S+ K GE W DK PY KA K K +YEKD+ Y + Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: SSRP1_RAT (FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11 Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRRQAEGTK 465 DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK+Y + + +K Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSK 623
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: SSRP1_MOUSE (FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11 Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRRQAEGTK 465 DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK+Y + + +K Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSK 623 The following BLAST results are available for this feature:
BLAST of CK933906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933906 ID=CK933906; Name=CK933906; organism=Citrus sinensis; type=EST; length=847bpback to top |