CK933908

Overview
NameCK933908
Unique NameCK933908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 4.714e-47
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 3
Query:  126 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RE LPL++ LRNRLKYALT  EV  I+MQR + VD KVRTD  YP+GFMDV++I KT E FRL+YD KGRF +H I  EEAK+KLCK
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRITAEEAKYKLCK 125          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 8.890e-46
Identity = 89/125 (71.20%), Postives = 100/125 (80.00%), Query Frame = 3
Query:  126 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            MARG KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL  REV AILMQR V VD KVRTD T+PAGFMDV+ + KT ENFRL+YD KGRF +H I DEEA +KL K
Sbjct:    1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGK 125          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 8.890e-46
Identity = 89/125 (71.20%), Postives = 101/125 (80.80%), Query Frame = 3
Query:  126 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VD KVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H I  EEAK+KLCK
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCK 125          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 2.586e-45
Identity = 88/125 (70.40%), Postives = 101/125 (80.80%), Query Frame = 3
Query:  126 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQ  + +D KVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H I  EEAK+KLCK
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCK 125          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.735e-41
Identity = 84/123 (68.29%), Postives = 93/123 (75.61%), Query Frame = 3
Query:  132 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E   IL QR V VD KVRT   +P GFMDVV+I +TNE FR+LYDTKGR+ +H I+  EA FKLCK
Sbjct:    2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCK 124          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.865e-41
Identity = 82/125 (65.60%), Postives = 95/125 (76.00%), Query Frame = 3
Query:  126 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            M RG KKHLKRL AP HWML KL G +AP+PS+GPH  RE LPL + LRNRL YAL  REV AI+MQ+HV V  KVRTD TYPAGFMDV+++  TNE+FRL YD KG+F +H I  EEA +KL K
Sbjct:    1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGK 125          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.624e-39
Identity = 78/106 (73.58%), Postives = 87/106 (82.08%), Query Frame = 3
Query:  183 LDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCK
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCK 106          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.164e-37
Identity = 79/126 (62.70%), Postives = 95/126 (75.40%), Query Frame = 3
Query:  129 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQR--HVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL  R+V  IL  +  +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L S+  EEAK+KL K
Sbjct:    1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLK 126          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.009e-30
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 3
Query:  126 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            M  G + HLKR  APK WMLDK GG FA  P+SGPHK  EC+PL  ++   L+YA  ++E+  IL ++++ V+ +VRT+  +P G  DVVSI KT E+FR+LY+   +F LH I  EEA ++L K
Sbjct:    1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTK 125          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 8.650e-25
Identity = 57/120 (47.50%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  132 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491
            +G K+HLKRL AP  W + +    +A +PS GPH  +  +PLI I+R+ L YA T RE   IL +  +LVD +VR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEAK K
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLK 123          
The following BLAST results are available for this feature:
BLAST of CK933908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS4_CARGR4.714e-4771.2040S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4_YARLI8.890e-4671.2040S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_DROME8.890e-4671.2040S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y2_HUMAN2.586e-4570.4040S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_CAEEL1.735e-4168.2940S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_CANAL3.865e-4165.6040S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_HORSE1.624e-3973.5840S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_TETTH1.164e-3762.7040S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_ENCCU4.009e-3048.8040S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_PYRKO8.650e-2547.5030S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_G05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933908 ID=CK933908; Name=CK933908; organism=Citrus sinensis; type=EST; length=502bp
GGGGAATGTTAGGGCCTNNNNGGAGTGGAGCTAGCAGCGCTTGTGAGTGC
ATTTCACTTCGTTTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATC
CAAGCTCAGGCTCACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATT
TGAAGAGGCTTAATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGA
GCATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTT
GCCCTTAATTCTTATCTTACGTAACCGCTTGAAGTATGCTCTTACATACC
GAGAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAG
GTTCGCACAGATAAGACTTACCCTGCTGGGTTCATGGATGTTGTGTCAAT
TCCAAAGACGAATGAGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGT
TCCGCCTTCATTCAATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAG
GT
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