CK933908

Overview
NameCK933908
Unique NameCK933908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.248e-22
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  126 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKL 494
            MAR G ++HLK L APK W + +  G F  KPS GPH     +PL++++R+ L YA T RE   ++ + H  +D +VR +  YP GFMDV+ I  T E +R+L      F LH I  EEA+FKL
Sbjct:    1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKL 124          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.952e-22
Identity = 53/123 (43.09%), Postives = 74/123 (60.16%), Query Frame = 3
Query:  132 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCK 124          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.952e-22
Identity = 53/123 (43.09%), Postives = 74/123 (60.16%), Query Frame = 3
Query:  132 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCK 124          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.402e-21
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  132 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +E + +L+D  GR  L   + ++   KLCK
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCK 124          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.897e-21
Identity = 54/122 (44.26%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  135 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            G +KHLK   APK W +      +  KPS+G H     L L L++R+ LK A   RE   I+   +VLVD +V  D  +P GFMD++ IPKT E +R+L D KGR +L+ I  EE   KLCK
Sbjct:    5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCK 124          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.880e-20
Identity = 49/123 (39.84%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  135 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            G K+H+KRL AP  W +  K GG FAP+P  GPH     +PL++++R+ L YA   RE   I+ +  + VD  VR +  +P G MDVV IP+T + +R++ +   R  +  I +EEA+ K+C+
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCR 129          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.415e-20
Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = 3
Query:  126 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            MAR G KKHLK L APK W + +    +A KPS GPH    C PL++I+R+ L YA T RE   ++ + H  VD +VR +  YP G MDV+ I  T E +R++        L  I  EEAK+KL +
Sbjct:    1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSR 126          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.867e-19
Identity = 53/123 (43.09%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  126 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491
            MAR G ++ LK L AP+ W + +    +A KP  GPH + + LPL+LI+RN L YA T RE   ++ + H  VD  VR D  +P GFMDV+ +  T E FR+L      F+LH I +EE   K
Sbjct:    1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLK 123          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.264e-19
Identity = 51/122 (41.80%), Postives = 70/122 (57.38%), Query Frame = 3
Query:  135 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            G  +HLK L AP ++ + K    +  KPS GPH   E +PL+LI+R+ LK A T RE   I+  + +LVD K R D  +  G MDV+SIP+   N+R++ D     RL  I   E+K KL K
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVK 126          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.520e-18
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            HL+R  +P+ W +++ G  ++ KPS GPH +   +PL ++LR+   YA T RE   I+ + +V VD KVR D  YP G MDV+ +   NE +R++ D     R   I   EA  K+C+
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCR 120          
The following BLAST results are available for this feature:
BLAST of CK933908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS4E_HYPBU5.248e-2244.3530S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_METVS8.952e-2243.0930S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA8.952e-2243.0930S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METMP3.402e-2141.4630S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METS39.897e-2144.2630S ribosomal protein S4e OS=Methanobrevibacter sm... [more]
RS4E_METKA2.880e-2039.8430S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_STAMF6.415e-2043.6530S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_AERPE1.867e-1943.0930S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_KORCO9.264e-1941.8030S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_CALMQ3.520e-1838.1430S ribosomal protein S4e OS=Caldivirga maquilinge... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_G05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933908 ID=CK933908; Name=CK933908; organism=Citrus sinensis; type=EST; length=502bp
GGGGAATGTTAGGGCCTNNNNGGAGTGGAGCTAGCAGCGCTTGTGAGTGC
ATTTCACTTCGTTTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATC
CAAGCTCAGGCTCACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATT
TGAAGAGGCTTAATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGA
GCATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTT
GCCCTTAATTCTTATCTTACGTAACCGCTTGAAGTATGCTCTTACATACC
GAGAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAG
GTTCGCACAGATAAGACTTACCCTGCTGGGTTCATGGATGTTGTGTCAAT
TCCAAAGACGAATGAGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGT
TCCGCCTTCATTCAATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAG
GT
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