CK933908
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 4.597e-18 Identity = 45/116 (38.79%), Postives = 73/116 (62.93%), Query Frame = 3 Query: 138 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 485 ++ H KRL+APK + + + + KPS GPH ++E +PL++++R+ L+ A T RE I+ +LVD VR D +P G DVV+IPK +++R+L+D KGR+ + D + K Sbjct: 2 IELHQKRLSAPKTYKIPRKVSKWVVKPSPGPH-NKEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEVEDADLK 116
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 7.842e-18 Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 HL+R AP W + K+GG + + S GPH LPL +I+R+ LKYA T RE I+ + +V +D +R D +P G MDVV I T E +R++ D K + L I EEA KL + Sbjct: 3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLR 121
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.338e-17 Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 HLKR+ AP+ W + + + KP G H +PL+++LR+ LK A E+ IL + VLVD KVR D Y G D +SIP N N+R++ G+F L + D A K+CK Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICK 120
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.338e-17 Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 HL+R +P W + K GG +A +PS GPH +PL L++R+ L+YA T RE I+ + ++ VD VR + +P G MDVV I T E +R++ D + + L I EEA KL + Sbjct: 3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLR 121
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.338e-17 Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 H KRL+ PK W + K G + GPH LPL +I+R+ LK RE IL + VLVD R D +P G DV+++P NE +R+L D KGR LH + + KLC+ Sbjct: 3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCR 119
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.747e-17 Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 3 Query: 126 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSIRDEEAKFKLCK 500 MAR G K+HLKRL AP W + + +A KP GPH E +PL++++R+ L YA T RE ++ + + VD +VR D +P G MDV+ I +E +R++ Y K + I EEAK K+C+ Sbjct: 1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICR 127
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.980e-17 Identity = 50/119 (42.02%), Postives = 66/119 (55.46%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 HL+R AP W + K GG + +PS GPH LPL LI+R+ LKYA T E I+ + +V VD VR D +P G MDV+ I T E +R++ D + L I EEA KL + Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLR 121
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.892e-17 Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491 H+ R AP M+ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR+L D R I +EA++K Sbjct: 3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYK 117
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.479e-16 Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 HL+R AP W + K GG + KPS GPH LPL +++R+ L+YA T RE I+ + ++ VD VR D +P G MDV+ I T E +R++ D + L I EA KL + Sbjct: 3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLR 121
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.479e-16 Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 H KRL+ PK W + + G + GPH LPL LI+R+ LK RE IL + VLVD R D +P G DV+++P NE +R+L D KGR L+ + + KLC+ Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCR 119 The following BLAST results are available for this feature:
BLAST of CK933908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933908 ID=CK933908; Name=CK933908; organism=Citrus sinensis; type=EST; length=502bpback to top |