CK933908

Overview
NameCK933908
Unique NameCK933908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.597e-18
Identity = 45/116 (38.79%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  138 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 485
            ++ H KRL+APK + + +    +  KPS GPH ++E +PL++++R+ L+ A T RE   I+    +LVD  VR D  +P G  DVV+IPK  +++R+L+D KGR+    + D + K
Sbjct:    2 IELHQKRLSAPKTYKIPRKVSKWVVKPSPGPH-NKEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEVEDADLK 116          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.842e-18
Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            HL+R  AP  W +  K+GG +  + S GPH     LPL +I+R+ LKYA T RE   I+ + +V +D  +R D  +P G MDVV I  T E +R++ D K  + L  I  EEA  KL +
Sbjct:    3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLR 121          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.338e-17
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            HLKR+ AP+ W + +    +  KP  G H     +PL+++LR+ LK A    E+  IL +  VLVD KVR D  Y  G  D +SIP  N N+R++    G+F L  + D  A  K+CK
Sbjct:    5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICK 120          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.338e-17
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            HL+R  +P  W +  K GG +A +PS GPH     +PL L++R+ L+YA T RE   I+ + ++ VD  VR +  +P G MDVV I  T E +R++ D +  + L  I  EEA  KL +
Sbjct:    3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLR 121          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.338e-17
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            H KRL+ PK W + K G  +      GPH     LPL +I+R+ LK     RE   IL +  VLVD   R D  +P G  DV+++P  NE +R+L D KGR  LH + +     KLC+
Sbjct:    3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCR 119          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.747e-17
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  126 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSIRDEEAKFKLCK 500
            MAR  G K+HLKRL AP  W + +    +A KP  GPH   E +PL++++R+ L YA T RE   ++ +  + VD +VR D  +P G MDV+ I   +E +R++ Y  K    +  I  EEAK K+C+
Sbjct:    1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICR 127          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.980e-17
Identity = 50/119 (42.02%), Postives = 66/119 (55.46%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            HL+R  AP  W +  K GG +  +PS GPH     LPL LI+R+ LKYA T  E   I+ + +V VD  VR D  +P G MDV+ I  T E +R++ D    + L  I  EEA  KL +
Sbjct:    3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLR 121          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.892e-17
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491
            H+ R  AP   M+ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR+L D     R   I  +EA++K
Sbjct:    3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYK 117          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.479e-16
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            HL+R  AP  W +  K GG +  KPS GPH     LPL +++R+ L+YA T RE   I+ + ++ VD  VR D  +P G MDV+ I  T E +R++ D    + L  I   EA  KL +
Sbjct:    3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLR 121          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.479e-16
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            H KRL+ PK W + + G  +      GPH     LPL LI+R+ LK     RE   IL +  VLVD   R D  +P G  DV+++P  NE +R+L D KGR  L+ + +     KLC+
Sbjct:    3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCR 119          
The following BLAST results are available for this feature:
BLAST of CK933908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS4E_ARCFU4.597e-1838.7930S ribosomal protein S4e OS=Archaeoglobus fulgidu... [more]
RS4E_PYRIL7.842e-1841.1830S ribosomal protein S4e OS=Pyrobaculum islandicu... [more]
RS4E_UNCMA1.338e-1738.9830S ribosomal protein S4e OS=Uncultured methanogen... [more]
RS4E_THENV1.338e-1739.5030S ribosomal protein S4e OS=Thermoproteus neutrop... [more]
RS4E_METAC1.338e-1739.8330S ribosomal protein S4e OS=Methanosarcina acetiv... [more]
RS4E_IGNH41.747e-1739.8430S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]
RS4E_PYRAE2.980e-1742.0230S ribosomal protein S4e OS=Pyrobaculum aerophilu... [more]
RS4E_SULSO3.892e-1740.0030S ribosomal protein S4e OS=Sulfolobus solfataric... [more]
RS4E_PYRAR1.479e-1639.5030S ribosomal protein S4e OS=Pyrobaculum arsenatic... [more]
RS4E_METMA1.479e-1638.9830S ribosomal protein S4e OS=Methanosarcina mazei ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_G05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933908 ID=CK933908; Name=CK933908; organism=Citrus sinensis; type=EST; length=502bp
GGGGAATGTTAGGGCCTNNNNGGAGTGGAGCTAGCAGCGCTTGTGAGTGC
ATTTCACTTCGTTTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATC
CAAGCTCAGGCTCACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATT
TGAAGAGGCTTAATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGA
GCATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTT
GCCCTTAATTCTTATCTTACGTAACCGCTTGAAGTATGCTCTTACATACC
GAGAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAG
GTTCGCACAGATAAGACTTACCCTGCTGGGTTCATGGATGTTGTGTCAAT
TCCAAAGACGAATGAGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGT
TCCGCCTTCATTCAATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAG
GT
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