CK933908

Overview
NameCK933908
Unique NameCK933908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.932e-16
Identity = 43/122 (35.25%), Postives = 69/122 (56.56%), Query Frame = 3
Query:  135 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            G  +HLK +NAP++W + +    +  K S GPH     LPL++++R+ L YA T +E   ++ + +  +D +VR D  +P G MDV+ I   N+ +R++        L  I  EEA FKLC+
Sbjct:    5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCR 126          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYK 117          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYK 117          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYK 117          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYK 117          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYK 117          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYK 117          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.620e-16
Identity = 47/122 (38.52%), Postives = 67/122 (54.92%), Query Frame = 3
Query:  138 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            +K+HL+ L  P+ W +  K  G +  KPS GPH     +P+ + LR+ L  A   REV  +L    VLVD +   D  +P G  DV++IP+ NE +R+L D +G+  L  I  EEA  K  K
Sbjct:    5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGK 126          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.620e-16
Identity = 45/118 (38.14%), Postives = 60/118 (50.85%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500
            H KRL+ P+ W   K G  +      GPH     LPL +I+R+ LK     RE   IL +  VLVD   R D  +P G  DV+++P  NE +R+  D KGR  LH +       KLC+
Sbjct:    3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCR 119          
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.340e-16
Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 3
Query:  147 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491
            HL++  AP  W +  K GG +A +PS+GPH     LPL +++R+ L+YA T RE   I+ + ++ VD  VR D  +P G MDVV I  T E +R++ D    + L  I   EA  K
Sbjct:    3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALK 118          
The following BLAST results are available for this feature:
BLAST of CK933908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS4E_DESK11.932e-1635.2530S ribosomal protein S4e OS=Desulfurococcus kamch... [more]
RS4E_SULIY4.303e-1638.2630S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIN4.303e-1638.2630S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIM4.303e-1638.2630S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIL4.303e-1638.2630S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIK4.303e-1638.2630S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIA4.303e-1638.2630S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_NANEQ5.620e-1638.5230S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4E_METBF5.620e-1638.1430S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_PYRCJ7.340e-1639.6630S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_G05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933908 ID=CK933908; Name=CK933908; organism=Citrus sinensis; type=EST; length=502bp
GGGGAATGTTAGGGCCTNNNNGGAGTGGAGCTAGCAGCGCTTGTGAGTGC
ATTTCACTTCGTTTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATC
CAAGCTCAGGCTCACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATT
TGAAGAGGCTTAATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGA
GCATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTT
GCCCTTAATTCTTATCTTACGTAACCGCTTGAAGTATGCTCTTACATACC
GAGAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAG
GTTCGCACAGATAAGACTTACCCTGCTGGGTTCATGGATGTTGTGTCAAT
TCCAAAGACGAATGAGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGT
TCCGCCTTCATTCAATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAG
GT
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