CK933908
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 6.870e-14 Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 H+ R AP L K + + + GPHK E +PL L+L++ L A T RE ++++ ++VD +VR D +P G MDV+SIP ++ FR++ D I E+AK+K + Sbjct: 3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVR 120
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.999e-13 Identity = 43/118 (36.44%), Postives = 61/118 (51.69%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 H+ R AP + K + + +GPHK +E +PL ++L+ LK T RE I+ VLVD KVR D YP G MDVV IP + R++ D +I E+AK+K + Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVR 120
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13 Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 H+ RL AP K + + S GPH + +PL L+LR+ L + + +E I+ VLVD +VR D YP G MDV++IP + R++ D + I +EE+KFKL + Sbjct: 3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVR 120
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12 Identity = 37/118 (31.36%), Postives = 65/118 (55.08%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 HLKR+ +PK W + + F K S GPH ++ LP+++ R+++ +E +L +R ++V+ + G D+VSIPK+ +++R+L D KGR I ++ A +L K Sbjct: 4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVK 120
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12 Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = 3 Query: 138 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 + H KRL PK W +++ A+ K ++GPH E +PL+++LR+ L Y + +E L Q +L++ +D+ P G D+++ + E +R+ D GR L I ++ A KL K Sbjct: 1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPH-GEEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGK 120
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 8.398e-12 Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 3 Query: 138 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 + +H KRL P W +++ F K +GPH +PL+++LR+ L Y + +E L VLV+ +D+ P G D+++ P+ E FR+ D GR L S+ +E A +L K Sbjct: 1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGK 120
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.097e-11 Identity = 37/125 (29.60%), Postives = 62/125 (49.60%), Query Frame = 3 Query: 126 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 MA+G+KKH KR+++ K G F K SSGPH + + L+ I++ A +E ++ + V+ K +P MD +S P N+++R+L G+ ++ I E K+CK Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICK 125
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3) HSP 1 Score: 68.9366 bits (167), Expect = 1.432e-11 Identity = 37/121 (30.58%), Postives = 64/121 (52.89%), Query Frame = 3 Query: 138 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 + H KRL+ P W +++ F K +GPH +PL+++LR+ L YA +E L + +VL++ K +D+ P G D+++ + E +R+ GR L +I + A+ KL K Sbjct: 1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGK 120 The following BLAST results are available for this feature:
BLAST of CK933908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933908 ID=CK933908; Name=CK933908; organism=Citrus sinensis; type=EST; length=502bpback to top |