CK933916

Overview
NameCK933916
Unique NameCK933916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:1..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933916 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.520e-28
Identity = 75/218 (34.40%), Postives = 105/218 (48.17%), Query Frame = 3
Query:  201 EMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTF 836
            E F + ++ +    C  + FYT  +F+ AA ++ GF         KREIAAFFA   HET                C+I+E++  S DYCD N   +PC+   KYYGRGP+Q+SWNYNY               +PD +A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +
Sbjct:   93 EAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDY 274          
BLAST of CK933916 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.980e-27
Identity = 81/224 (36.16%), Postives = 103/224 (45.98%), Query Frame = 3
Query:  189 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPP--SDYCDPN----YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTF 836
            I+S+  FD ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C I E        YCD +    YPC    KYYGRGP+QLSWNYNY               NP+ +ATD   SFK+A+WFWMT                     +V++    G+G TT  ING +EC         +RI F+  +
Sbjct:   90 IVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKY 274          
BLAST of CK933916 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.083e-27
Identity = 77/225 (34.22%), Postives = 114/225 (50.67%), Query Frame = 3
Query:  180 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTF 836
            +G I+++  F+ ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +C+I E++  S DYCD N   YPC  GK Y+GRGPIQLSWNYNY  C             P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC  G + AV  RI ++  +
Sbjct:   72 VGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHET-------------GHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDY 254          
BLAST of CK933916 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.639e-27
Identity = 72/218 (33.03%), Postives = 106/218 (48.62%), Query Frame = 3
Query:  201 EMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTF 836
            E F + ++ +    C  + FYT  +F+ AA+++ GF N       KREIAAFFA   HET                C+I+E++  + DYCD +   +PC+   KYYGRGP+Q+SWN+NY               +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +
Sbjct:   90 EAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDY 271          
BLAST of CK933916 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.789e-25
Identity = 72/223 (32.29%), Postives = 107/223 (47.98%), Query Frame = 3
Query:  189 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCD----PNYPCRGK--YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTF 836
            I++ +  + +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+I E+   S DYCD      YPC     Y+GRGPIQLSWN+NY                P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +
Sbjct:   71 ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEY 256          
BLAST of CK933916 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.292e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 3
Query:  645 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 782
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CK933916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI5_ORYSJ3.520e-2834.40Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU2.980e-2736.16Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_BRANA5.083e-2734.22Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI4_ORYSJ6.639e-2733.03Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU2.789e-2532.29Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY2.292e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_F08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933916 ID=CK933916; Name=CK933916; organism=Citrus sinensis; type=EST; length=837bp
GGGACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAAATG
AGGCTTATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACT
AGGAGGCTCAGCACAGAACTGTGGAAGCGGCGTTGTGTACGGTGGACGTG
ATACCGGCCATGGGACGCATGGCGGTGAACTGGGCAAGATCATCTCAAGG
GAGATGTTTGATGACTTGCTTGAGTATAGAAATGATGAACGATGCCCTGC
CAGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCCAAGCTTTTC
CAGGCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATCGCT
GCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGC
ACCTGGTGGCGAATATGCTTGGGGATATTGCTTTATAAGCGAAGTTAGCC
CTCCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTAT
GGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTACGGTGCGG
AGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTG
CTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACT
GCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAA
ACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAA
CCACAAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGCC
GCTGTACGTAACCGTATTGGGTTCTTTACCACTTTCT
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