CK933918

Overview
NameCK933918
Unique NameCK933918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10040 contig Csv1_Contig10040:1..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.894e-17
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  528 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA H+ADP +NN
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 255          
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.894e-17
Identity = 54/111 (48.65%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  411 YLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            YLGNP  V   ++  I   + + +  VE  R     P    E   YPGG+FDPL    DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:    3 YLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 112          
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.067e-16
Identity = 55/145 (37.93%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  183 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKF 581
            E  P YL G  PGD+G+D   L   PE   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R       +   + YPGGAFDPLG ++DP+ F
Sbjct:   62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGG-LDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.741e-14
Identity = 57/142 (40.14%), Postives = 73/142 (51.41%), Query Frame = 3
Query:  330 ILVPEALGLGN--WVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            +LV   +  G   W +A       GG   YLGNP  +   ++  I   + + +  +E  R          DP    YPG AFDPLG + DP+   E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  HLADP  NN
Sbjct:    2 LLVKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHLADPVANN 138          
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.925e-13
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  438 TLPTILVIEFLSIAFVEHQRSMEKDPEK------KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            +L  IL  + L +  VE  R+    P +      + YPGG FDPLG + DP  F E KVKEIKNGRLA+   +GF   Q+   G GP+EN   HL DP  +N
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGF-YAQAIVTGEGPVENWLYHLQDPSAHN 110          
The following BLAST results are available for this feature:
BLAST of CK933918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CB2E_SOLLC4.894e-1763.64Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA4.894e-1748.65Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_SILPR7.067e-1637.93Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_PINSY1.741e-1440.14Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_EUGGR1.925e-1344.12Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_F10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933918 ID=CK933918; Name=CK933918; organism=Citrus sinensis; type=EST; length=855bp
GGGACCCCTCACACAGCTCTCCCAAAATGGCTTCCAACACTCTGATGAGC
TGCGGCATCGCCACCACCGCTTTCCCTTCGGTCCTCTCATCTTCTAAATC
CAAATTCTTTACTGCAGTTTCACTTCCAGCTGCCGCCAATGCAACCTCGA
AATACGCCATGTCTGCTGACTGGATGCCCGGCGAGCCCCGGCCGCCTTAT
CTTGATGGTTCAGCCCCAGGGGACTTTGGATTTGACCCACTTCGGCTTGG
CGAAGTTCCTGAGAACCTTGAGAGATACAAGGAGTCTGAACTCATTCACT
GCAGATGGGCTATGCTTGCTGTTCCAGGGATCTTGGTGCCAGAGGCATTG
GGATTGGGCAACTGGGTGCAGGCGCAAGAGTGGGCAGCAGTTCCTGGAGG
ACAAGCCACATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCCCACAA
TTTTGGTGATTGAATTCCTTTCCATTGCCTTCGTTGAGCACCAACGCAGC
ATGGAGAAAGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTCGACCC
CTTGGGCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGTCAAGG
AGATAAAAAATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCTGCGTG
CAACAATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCAACTCA
CTTGGCTGATCCATGGCACAACAACATTGGGGACGTTATTATCCCCAGAG
GGATTGTGCCTTGAAGAACTGCATTGTTAAATTATCCAGTCCACTGTAAA
ATTCCCTGGTAAAAAGAGCTTTTAATGAAAAAAAAAAAAAAAAAAAAANA
AAAAA
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