CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934082_ssr47 microsatellite CK934082_ssr47:47..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.392e-26
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GK FPV++P T E +  V EGD ED+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E+ N GK Y  +  +++   ++ L Y AGWADKI G T+P DG     T HE
Sbjct:   35 GKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHE 158          

HSP 2 Score: 25.409 bits (54), Expect = 2.392e-26
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  246 IIPPVQISYTKNLINGQFVDAASGK 320
            ++  ++I YTK  IN ++ D+ SGK
Sbjct:   12 LLTDLKIQYTKIFINNEWHDSVSGK 36          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 4.050e-26
Identity = 56/124 (45.16%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            G+ FPVY+P T E I  + E D  D D+AV  AR AF  G  W +M   ER +++ + ADL+E++   LA +E+ N+GKP++Q+   ++  V++ L YYAGWADKIHG+T+P DG     T HE
Sbjct:   52 GRVFPVYNPATGEQICEIQEADKVDTDKAVRAARLAFSLGSVWRRMDASERGQLLDKLADLVERDRAVLATMESLNSGKPFLQAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHE 175          

HSP 2 Score: 20.4014 bits (41), Expect = 4.050e-26
Identity = 7/22 (31.82%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  258 VQISYTKNLINGQFVDAASGKM 323
            ++I +TK  IN ++ ++ SG++
Sbjct:   33 LEIKHTKIFINNEWQNSESGRV 54          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.052e-26
Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFD-EGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GKTF   +P T E +A V EGD  DID+AVA AR AF  +  + K    +R R++ + ADLIE +  +L  LET +NGKP+  S   +  M  ++L YYAG+ADKI G T+P DG     T HE
Sbjct:   32 GKTFATINPSTGEKLAEVQEGDKADIDKAVAAARAAFKRDAEYRKHDASDRGRLLFKLADLIEAHRVQLRTLETLDNGKPFAMSYLGDTLMAQKVLRYYAGFADKIVGQTIPADGNVFCYTRHE 155          

HSP 2 Score: 29.261 bits (64), Expect = 4.052e-26
Identity = 13/33 (39.39%), Postives = 22/33 (66.67%), Query Frame = 3
Query:  222 TAAVVEEPIIPPVQISYTKNLINGQFVDAASGK 320
            +A  + EP+   +++ +TK  IN +FVD+ SGK
Sbjct:    2 SAPKIPEPV-KDLKVEFTKIFINNEFVDSVSGK 33          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH4_BACSU (Putative aldehyde dehydrogenase dhaS OS=Bacillus subtilis GN=dhaS PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.917e-26
Identity = 56/125 (44.80%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  395 ALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            A G TF   +P T E +  + E  A D+D+AV  ARKAFD+G W  M+P  RSR+M + ADL+E++  ELA LET +NGKP  ++   ++P+ +  + YYAGW  KI G T+P  G     T HE
Sbjct:   32 ASGATFDTPNPATGETLMTLYEAQAADVDKAVKAARKAFDQGEWRTMSPASRSRLMYKLADLMEEHKTELAQLETLDNGKPINETTNGDIPLAIEHMRYYAGWCTKITGQTIPVSGAYFNYTRHE 156          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.564e-25
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GKTFPV++P T E I  V E D ED+D+AV  AR+AF  G PW  M   ER +++ + ADLIE++   LA LE+ N GK +  +   ++   +++L Y AGWADKI G T+P DG     T HE
Sbjct:   35 GKTFPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKIFASAYLMDLDYCIKVLRYCAGWADKIQGRTIPVDGEFFSYTRHE 158          

HSP 2 Score: 23.483 bits (49), Expect = 2.564e-25
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  258 VQISYTKNLINGQFVDAASGK 320
            ++I +TK  IN ++ D+ SGK
Sbjct:   16 IKIQHTKLFINNEWHDSVSGK 36          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.337e-25
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GK FPV++P T E +  V EGD ED+++AVA AR+AF  G PW  M   ER R++ + ADL+E++   LA +E+ N GK +  +   ++   ++ L Y AGWADKI G T+P DG     T HE
Sbjct:   34 GKKFPVFNPATEEKLCEVEEGDKEDVNKAVAAARQAFQIGSPWRTMDASERGRLLYKLADLVERDRLILATMESMNGGKLFSNAYLMDLGGCLKTLRYCAGWADKIQGRTIPSDGNFFTYTRHE 157          

HSP 2 Score: 23.8682 bits (50), Expect = 3.337e-25
Identity = 9/25 (36.00%), Postives = 16/25 (64.00%), Query Frame = 3
Query:  246 IIPPVQISYTKNLINGQFVDAASGK 320
            ++  ++  YTK  IN ++ D+ SGK
Sbjct:   11 LLTDLKFQYTKIFINNEWHDSVSGK 35          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 7.355e-25
Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GK FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADL+E++   LA +E  N GK +  +  S++   ++ L Y AGWADKIHG T+P DG     T  E
Sbjct:   35 GKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATIEAINGGKVFANAYLSDLGGSIKALKYCAGWADKIHGQTIPSDGDIFTFTRRE 158          

HSP 2 Score: 23.483 bits (49), Expect = 7.355e-25
Identity = 11/31 (35.48%), Postives = 19/31 (61.29%), Query Frame = 3
Query:  240 EPIIPP----VQISYTKNLINGQFVDAASGK 320
            +P +P     ++I +TK  IN ++ D+ SGK
Sbjct:    6 QPAVPAPLANLKIQHTKIFINNEWHDSVSGK 36          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 111.309 bits (277), Expect = 9.572e-25
Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GK FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADL+E++   LA +E  N GK +  +  S++   ++ L Y AGWADKIHG T+P DG     T  E
Sbjct:   35 GKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMEALNGGKVFANAYLSDLGGCIKALKYCAGWADKIHGQTIPSDGDIFTYTRRE 158          

HSP 2 Score: 21.557 bits (44), Expect = 9.572e-25
Identity = 10/31 (32.26%), Postives = 19/31 (61.29%), Query Frame = 3
Query:  240 EPIIPP----VQISYTKNLINGQFVDAASGK 320
            +P +P     ++I +TK  IN ++ ++ SGK
Sbjct:    6 QPAVPAPLADLKIQHTKIFINNEWHNSVSGK 36          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH1_ELEED (Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulus edwardii GN=ALDH1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.572e-25
Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GKTFPV++P T E I  V E D ED+D+AV  AR+AF  G PW  M   ER +++ + ADLIE++   LA LE+ N GK +  +   ++   ++ L Y AGWADKI G T+P DG     T HE
Sbjct:   35 GKTFPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKVFASAYLMDLDYCIKALRYCAGWADKIQGRTIPVDGEFFSYTRHE 158          

HSP 2 Score: 21.9422 bits (45), Expect = 9.572e-25
Identity = 8/21 (38.10%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  258 VQISYTKNLINGQFVDAASGK 320
            ++I +TK  IN ++ ++ SGK
Sbjct:   16 IKIQHTKLFINNEWHESVSGK 36          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.621e-24
Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GK F V++P   E I  VAEGD  DID+AV  ARKAF+ G PW  M   ER R++ + ADL+E++   LA +E  + GK +  +   ++   ++ + Y AGWADKIHG TVP DG     T HE
Sbjct:   43 GKKFEVFNPANEEKICEVAEGDKADIDKAVKAARKAFELGSPWRTMDASERGRLLNKLADLVERDRLTLATMEAIDGGKLFSTAYLMDLGACIKTIRYCAGWADKIHGRTVPMDGNFFTFTRHE 166          

HSP 2 Score: 24.6386 bits (52), Expect = 1.621e-24
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  258 VQISYTKNLINGQFVDAASGK 320
            ++I YTK  IN ++ D+ SGK
Sbjct:   24 LKIKYTKIFINNEWHDSVSGK 44          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
AL1A1_HUMAN2.392e-2645.97Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL1A2_CHICK4.050e-2645.16Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
ALDH_ENCBU4.052e-2645.97Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
ALDH4_BACSU4.917e-2644.80Putative aldehyde dehydrogenase dhaS OS=Bacillus s... [more]
ALDH1_MACPR2.564e-2545.97Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]
AL1A1_HORSE3.337e-2544.35Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A1_RAT7.355e-2545.97Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL1A1_MOUSE9.572e-2545.97Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
ALDH1_ELEED9.572e-2545.97Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulu... [more]
AL1A1_CHICK1.621e-2445.16Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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