CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934082_ssr47 microsatellite CK934082_ssr47:47..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_VIBSL (Betaine aldehyde dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=betB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 34/107 (31.78%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHG 721
            G+TF   +P   E IA + +  + D++ A+ +A++ F    W  MT  ERSRI+L+A +++     +LA LE  + GKP  ++++ +V     ++ Y+AG A  + G
Sbjct:   18 GETFVSINPANGEPIATLGQASSADVENAIESAKRGF--AVWSAMTAVERSRILLKAVEILRARNNDLANLEVVDTGKPLQEAIEVDVASGADVIEYFAGLAPTLQG 122          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: A9A1B_DANRE (Aldehyde dehydrogenase family 9 member A1-B OS=Danio rerio GN=aldh9a1b PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 43/122 (35.25%), Postives = 64/122 (52.46%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            K+ PV++P T  V+  +    + ++D AV  A  AF    W K++  ER+R+ML AA LIEK  EE+A +E  NNGK   ++ + +V      + Y+AG A  + G  V   G     T  E
Sbjct:   51 KSEPVFEPATGRVLCRLQTCGSAEVDAAVRNASAAFKV--WRKLSGMERARVMLEAARLIEKRREEIAEMEVINNGKSITEA-RLDVDSARLSIEYFAGQATTLSGQHVQLPGGSFAYTRRE 169          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL9A1_ORYLA (Aldehyde dehydrogenase family 9 member A1 OS=Oryzias latipes GN=aldh9A1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  413 PVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHG 721
            PV++P T  V+  +    AE++D A+ +A  A+ +  W K +  ER+R+ML AA +I +  E++A LE  NNGK   ++L  ++ +  + + YYAG A  + G
Sbjct:   41 PVFEPATGRVLCQMVPCGAEEVDEAIMSAHAAYVQ--WSKKSGTERARVMLEAARIIRERREKIAKLEVINNGKSITEAL-VDIDVAWQCIEYYAGVAGTLAG 140          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH_MYCTU (Probable aldehyde dehydrogenase OS=Mycobacterium tuberculosis GN=Rv0458 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 37/99 (37.37%), Postives = 52/99 (52.53%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYA 697
            G+ F    P T +    V   DA DID+A+  A  A     W K  P ER+ I+   AD I+KN   LA  E W+NGKP  ++L +++P+ V    Y+A
Sbjct:   34 GRYFENPTPVTGQPFCEVPRSDAADIDKALDAAHAAAPG--WGKTAPAERAAILNMIADRIDKNAAALAVAEVWDNGKPVREALAADIPLAVDHFRYFA 130          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH_MYCBO (Probable aldehyde dehydrogenase OS=Mycobacterium bovis GN=Mb0467 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 37/99 (37.37%), Postives = 52/99 (52.53%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYA 697
            G+ F    P T +    V   DA DID+A+  A  A     W K  P ER+ I+   AD I+KN   LA  E W+NGKP  ++L +++P+ V    Y+A
Sbjct:   34 GRYFENPTPVTGQPFCEVPRSDAADIDKALDAAHAAAPG--WGKTAPAERAAILNMIADRIDKNAAALAVAEVWDNGKPVREALAADIPLAVDHFRYFA 130          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL8A1_BOVIN (Aldehyde dehydrogenase family 8 member A1 OS=Bos taurus GN=ALDH8A1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 2
Query:  419 YDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYA 697
            YDP T EV  +V     E+I+ AV  AR AF    W   +P ERS+++ R ADL+E+++EELA  E+ + GK    +   ++P  V    ++A
Sbjct:   28 YDPSTGEVYCHVPNSGKEEIEAAVEAARAAFPG--WSSRSPQERSQVLQRLADLLEQSLEELAQAESKDQGKTITLARTMDIPRAVHNFRFFA 118          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: THCA_RHOER (EPTC-inducible aldehyde dehydrogenase OS=Rhodococcus erythropolis GN=thcA PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 35/100 (35.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAG 700
            G+ F    P T +   +VA   AEDI+ A+  A  A     W K +  ER+ I+ + AD +E+N+E +A  E+W+NGKP  ++L +++P+ +    Y+AG
Sbjct:   34 GQYFENPTPVTGQNFCDVARSTAEDIELALDAAHAAAPA--WGKTSVAERAIILNKIADRMEENLESIALAESWDNGKPIRETLNADIPLAIDHFRYFAG 131          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
BETB_VIBSL1.536e-1131.78Betaine aldehyde dehydrogenase OS=Vibrio splendidu... [more]
A9A1B_DANRE2.005e-1135.25Aldehyde dehydrogenase family 9 member A1-B OS=Dan... [more]
AL9A1_ORYLA3.421e-1134.95Aldehyde dehydrogenase family 9 member A1 OS=Oryzi... [more]
ALDH_MYCTU7.621e-1137.37Probable aldehyde dehydrogenase OS=Mycobacterium t... [more]
ALDH_MYCBO7.621e-1137.37Probable aldehyde dehydrogenase OS=Mycobacterium b... [more]
AL8A1_BOVIN7.621e-1137.63Aldehyde dehydrogenase family 8 member A1 OS=Bos t... [more]
THCA_RHOER9.953e-1135.00EPTC-inducible aldehyde dehydrogenase OS=Rhodococc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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