CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934082_ssr47 microsatellite CK934082_ssr47:47..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A3_HUMAN (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 6.467e-23
Identity = 53/124 (42.74%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GK F   +P T E I  V EGD  D+D+AV  A+ AF  G PW ++    R R++ + ADL+E++   LAALET + GKP++ +   ++   +R L Y+AGWADKI G T+P D      T HE
Sbjct:   46 GKKFATCNPSTREQICEVEEGDKPDVDKAVEAAQVAFQRGSPWRRLDALSRGRLLHQLADLVERDRATLAALETMDTGKPFLHAFFIDLEGCIRTLRYFAGWADKIQGKTIPTDDNVVCFTRHE 169          

HSP 2 Score: 21.1718 bits (43), Expect = 6.467e-23
Identity = 7/21 (33.33%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  258 VQISYTKNLINGQFVDAASGK 320
            +++ +TK  IN ++ ++ SGK
Sbjct:   27 LEVKFTKIFINNEWHESKSGK 47          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: CROM_ENTDO (Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 6.471e-23
Identity = 52/124 (41.94%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GK + V +P T + I +V EG   DID+AV   + AF  G PW +M    R  ++ R ADL E+++  L++LET N GKPY +S   ++   +++L YYAGWADK  G  +P DG     T HE
Sbjct:   30 GKAYSVINPCTTKKICDVQEGSKADIDKAVQACKLAFKRGTPWRRMDASRRGHLLYRLADLFERDIAYLSSLETLNTGKPY-KSAYQDIVHCIQVLRYYAGWADKNMGQNIPVDGDFFSFTKHE 152          

HSP 2 Score: 27.7202 bits (60), Expect = 6.471e-23
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  261 QISYTKNLINGQFVDAASGK 320
            +I +TK  IN QFVD+ +GK
Sbjct:   12 EIKFTKIFINNQFVDSVNGK 31          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH_ALTAL (Aldehyde dehydrogenase OS=Alternaria alternata GN=ALTA10 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.480e-22
Identity = 54/110 (49.09%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTV 730
            GKTF V +P T EVI +V E   +D+D AVA ARKAF+ GPW K TP  R +++ + ADL EKN + +AA+E  +NGK +  +   +VP     L YY GWADKI G  V
Sbjct:   32 GKTFDVINPSTEEVICSVQEATEKDVDIAVAAARKAFN-GPWRKETPENRGKLLNKLADLFEKNADLIAAVEALDNGKAFSMAKNVDVPAAAGCLRYYGGWADKIEGKVV 140          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH_EMENI (Aldehyde dehydrogenase OS=Emericella nidulans GN=aldA PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.347e-22
Identity = 55/123 (44.72%), Postives = 80/123 (65.04%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GKTF V +P   +VI +V E   +D+D AVA AR AF EGPW ++TP ER  ++ + ADL+E++++ LAA+E+ +NGK +  + K ++   +  L YYAGWADKIHG T+  +      T HE
Sbjct:   33 GKTFQVINPSNEKVITSVHEATEKDVDVAVAAARAAF-EGPWRQVTPSERGILINKLADLMERDIDTLAAIESLDNGKAFTMA-KVDLANSIGCLRYYAGWADKIHGQTIDTNPETLTYTRHE 153          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH2_LEITA (Aldehyde dehydrogenase, mitochondrial OS=Leishmania tarentolae GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.170e-21
Identity = 54/115 (46.96%), Postives = 73/115 (63.48%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYE-RSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDG 742
            GKTF V +P   +VIANVAE +  D+D AV  AR AF+     +MT  + R  +MLR AD++EKN +E+AALE+ +NGKPY  +L  +V + V    Y AG ADK++G   P  G
Sbjct:   34 GKTFEVVNPADEKVIANVAEAEKADVDLAVKAARHAFESF---RMTDCQWRRNLMLRLADILEKNSKEMAALESLDNGKPYEVALNVDVALSVECFRYCAGLADKVNGTVPPRSG 145          

HSP 2 Score: 25.409 bits (54), Expect = 1.170e-21
Identity = 14/32 (43.75%), Postives = 17/32 (53.12%), Query Frame = 3
Query:  225 AAVVEEPIIPPVQISYTKNLINGQFVDAASGK 320
            A +    + P V     K LING+FV A SGK
Sbjct:    4 ATLARLEMAPKVTHIQEKLLINGKFVPAVSGK 35          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.792e-21
Identity = 50/124 (40.32%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            G+ F  Y+P T E I  V EGD  D+D+AV  A+ AF  G PW ++    R +++ + ADLIE++   LA LET + GKP++ +   ++   ++   Y+AGWADKI G T+P D      T HE
Sbjct:   46 GRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLIERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGRTIPTDDNVMCFTRHE 169          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.762e-21
Identity = 49/124 (39.52%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            G+ F  Y+P T E I  V EGD  D+D+AV  A+ AF  G PW ++    R +++ + ADL+E++   LA LET + GKP++ +   ++   ++   Y+AGWADKI G T+P D      T HE
Sbjct:   46 GRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLVERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGRTIPTDDNVVCFTRHE 169          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: FTHFD_MOUSE (10-formyltetrahydrofolate dehydrogenase OS=Mus musculus GN=Aldh1l1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.364e-20
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            KT+   +P    VI  V+     D+D+AVA A++AF+ G W K+   +R R++ R ADL+E++ EELA +E  + G  Y  +LK+ V M ++   Y+AGW DKI G T+P
Sbjct:  437 KTYSTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIP 546          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: FTHFD_RAT (10-formyltetrahydrofolate dehydrogenase OS=Rattus norvegicus GN=Aldh1l1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.032e-20
Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            KT+   +P    VI  V+     D+D+AVA A++AF+ G W K+   +R R++ R AD++E++ EELA +E  + G  Y  +LK+ V M ++   Y+AGW DKI G T+P
Sbjct:  437 KTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDRGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIP 546          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: FTHFD_PONAB (10-formyltetrahydrofolate dehydrogenase OS=Pongo abelii GN=ALDH1L1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.032e-20
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            KT+   +P    VI  V+     D+D+AVA A+ AF+ G W K++  +R R++ R ADL+E++ EELA +E  + G  Y  +LK+ V M ++   Y+AGW DKI G T+P
Sbjct:  437 KTYETINPTDGSVICQVSLAQVTDVDKAVAAAKDAFENGRWGKISARDRGRLLYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGSTIP 546          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
AL1A3_HUMAN6.467e-2342.74Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]
CROM_ENTDO6.471e-2341.94Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=... [more]
ALDH_ALTAL1.480e-2249.09Aldehyde dehydrogenase OS=Alternaria alternata GN=... [more]
ALDH_EMENI7.347e-2244.72Aldehyde dehydrogenase OS=Emericella nidulans GN=a... [more]
ALDH2_LEITA1.170e-2146.96Aldehyde dehydrogenase, mitochondrial OS=Leishmani... [more]
AL1A3_RAT2.792e-2140.32Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
AL1A3_MOUSE4.762e-2139.52Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
FTHFD_MOUSE2.364e-2040.9110-formyltetrahydrofolate dehydrogenase OS=Mus mus... [more]
FTHFD_RAT4.032e-2040.0010-formyltetrahydrofolate dehydrogenase OS=Rattus ... [more]
FTHFD_PONAB4.032e-2040.9110-formyltetrahydrofolate dehydrogenase OS=Pongo a... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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