CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934082_ssr47 microsatellite CK934082_ssr47:47..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_SERP5 (Gamma-aminobutyraldehyde dehydrogenase OS=Serratia proteamaculans (strain 568) GN=Spro_3642 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G   PVY+P T EV+  VAE  AE +D+AV  A  AF+   W + TP ER+  +L+ ADLI+ + E  A LE+ N GKPY   L  E+P V  +  ++AG +  + GL
Sbjct:   16 GALLPVYNPATGEVVVQVAEASAEQVDQAVLAADAAFEH--WGQTTPKERAEHLLKLADLIDSHAETFARLESINCGKPYHCVLNDELPGVADVFRFFAGASRCLSGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_BACSU (Betaine aldehyde dehydrogenase OS=Bacillus subtilis GN=gbsA PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.613e-16
Identity = 43/102 (42.16%), Postives = 67/102 (65.69%), Query Frame = 2
Query:  416 VYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHG 721
            + +P   E IA V+EG  ED  +A+A AR+AFD+G W  ++  ER +I+L+ A+LI +++EELA LE+ + GK   +S K+++  +  +  YYAG ADK  G
Sbjct:   22 IINPFNQEEIATVSEGGREDAIKAIAAARRAFDKGEWSSLSGLERGKIVLKIAELIRRDLEELAELESLDTGKTLEES-KADMDDIANVFQYYAGLADKDGG 122          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH4_YEAST (Potassium-activated aldehyde dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=ALD4 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.868e-16
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHG 721
            KTF V +P T E I ++ EG  +D++ AV  A +AF  G W  + P +R + + R A+LIE++ + +A++ET +NGK  + S + +V +V+  L   AG+ADKI G
Sbjct:   60 KTFEVINPSTEEEICHIYEGREDDVEEAVQAADRAFSNGSWNGIDPIDRGKALYRLAELIEQDKDVIASIETLDNGKA-ISSSRGDVDLVINYLKSSAGFADKIDG 164          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_SHIDS (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ydcW PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.868e-16
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTV 730
            G+  PVY+P T +V+  +AE  AE +D AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL V
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAE--WGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAV 123          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECOLU (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.868e-16
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T EV+  +AE  AE +D AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGEVLLEIAEASAEQVDAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_KLEP3 (Betaine aldehyde dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 2
Query:  386 TCLALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            T    G+TF   +P T EV+A V     ED+DRAV +A++   +  W  MT  ERSRI+ RA DL+ +  +ELA LET + GKP  ++   ++     +L YYAG    + G  +P
Sbjct:   16 TSATSGRTFETINPATGEVLATVQAAGREDVDRAVESAQRG--QKIWAAMTAMERSRILRRAVDLLRQRNDELARLETLDTGKPLSETAAVDIVTGADVLEYYAGLIPALEGSQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_CITK8 (Gamma-aminobutyraldehyde dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=CKO_01478 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T EVI  +AE     +D AV  A +AF E  W + TP  R+ ++L  AD+IE+N +  A LE+ N GKP   +L  E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGEVILEIAEASPAQVDAAVRAADRAFAE--WGQTTPKARAELLLTLADVIEENAQTFAELESQNCGKPLHCALNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_SERP5 (Betaine aldehyde dehydrogenase OS=Serratia proteamaculans (strain 568) GN=betB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.684e-15
Identity = 44/111 (39.64%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            GKTF   +P   EV+A +    AED++RAVA+A  A  +  W  MT   RSRI+ RA D++ +  +ELAALET + GK   ++   ++     +L YYAG    I G  +P
Sbjct:   21 GKTFNAVNPANGEVLAEIQSASAEDVNRAVASA--ASGQKVWAAMTAMARSRILRRAVDILRERNDELAALETLDTGKAMSETTAVDIVTGADVLEYYAGLIPSIEGQQIP 129          

HSP 2 Score: 20.4014 bits (41), Expect = 1.684e-15
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 3
Query:  276 KNLINGQFVDAASGK 320
            K  ING +VD+  GK
Sbjct:    8 KLYINGAYVDSTDGK 22          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_YERP3 (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=betB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.753e-15
Identity = 45/125 (36.00%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  395 ALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            A G TF   +P   E IA +   +A+D+D+AVA A++   +  W  MT  ERSRI+ RA D++    +ELAA+ET + GKP  ++   ++     +L YYAG    + G  +P  G   + T  E
Sbjct:   19 ASGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGSAFVYTRRE 141          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_BURP8 (Betaine aldehyde dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=betB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.753e-15
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            G TF  +DP T E++A V +    DI+RAV +AR+   +  W  MT  +RSRI+ RA DL+ +  +ELA LE  + GKP  ++   ++     ++ YYAG A  I G  +P      + T  E
Sbjct:   21 GVTFDTFDPATGELLATVQQASEADIERAVQSAREG--QRAWAAMTAMQRSRILRRAVDLLRERNDELAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGQQIPLRAESFVYTRRE 141          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
ABDH_SERP53.532e-1642.59Gamma-aminobutyraldehyde dehydrogenase OS=Serratia... [more]
BETB_BACSU4.613e-1642.16Betaine aldehyde dehydrogenase OS=Bacillus subtili... [more]
ALDH4_YEAST7.868e-1639.62Potassium-activated aldehyde dehydrogenase, mitoch... [more]
ABDH_SHIDS7.868e-1640.00Gamma-aminobutyraldehyde dehydrogenase OS=Shigella... [more]
ABDH_ECOLU7.868e-1640.74Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
BETB_KLEP31.028e-1538.79Betaine aldehyde dehydrogenase OS=Klebsiella pneum... [more]
ABDH_CITK81.028e-1540.74Gamma-aminobutyraldehyde dehydrogenase OS=Citrobac... [more]
BETB_SERP51.684e-1539.64Betaine aldehyde dehydrogenase OS=Serratia proteam... [more]
BETB_YERP31.753e-1536.00Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_BURP81.753e-1536.59Betaine aldehyde dehydrogenase OS=Burkholderia phy... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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