CK934221

Overview
NameCK934221
Unique NameCK934221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1666 contig Csv1_Contig1666:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934221 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.083e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 3
Query:   33 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CK934221 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.701e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 3
Query:   33 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CK934221 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 3
Query:   33 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CK934221 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.231e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 3
Query:   33 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CK934221 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.477e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 3
Query:   66 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 254
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CK934221 vs. ExPASy Swiss-Prot
Match: RL40_NICSY (60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 3
Query:  261 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 416
            IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKKIK 52          
BLAST of CK934221 vs. ExPASy Swiss-Prot
Match: RL40_ORYSJ (60S ribosomal protein L40 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 3
Query:  261 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 416
            IIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of CK934221 vs. ExPASy Swiss-Prot
Match: RL40_ARATH (60S ribosomal protein L40 OS=Arabidopsis thaliana GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 3
Query:  261 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 416
            IIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of CK934221 vs. ExPASy Swiss-Prot
Match: RL40_BRARA (60S ribosomal protein L40 OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 3
Query:  261 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 416
            IIEPSLMALARKYNQ KMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQAKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of CK934221 vs. ExPASy Swiss-Prot
Match: RL40_CHLRE (60S ribosomal protein L40 OS=Chlamydomonas reinhardtii GN=UBI1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 3
Query:  261 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 416
            IIEPSL ALARKYNQ+KMICRKCYARLHPRA NCRKK CGH+NQLRPKKK+K
Sbjct:    1 IIEPSLQALARKYNQEKMICRKCYARLHPRAKNCRKKSCGHTNQLRPKKKLK 52          
The following BLAST results are available for this feature:
BLAST of CK934221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
UBIQ_LEIMA2.083e-3393.42Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA6.701e-3290.79Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP3.442e-2880.26Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC2.231e-2776.32Ubiquitin-like protein OS=Autographa californica n... [more]
UBIQ_LUMTE8.477e-2795.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
RL40_NICSY3.015e-2498.0860S ribosomal protein L40 OS=Nicotiana sylvestris ... [more]
RL40_ORYSJ5.143e-2498.0860S ribosomal protein L40 OS=Oryza sativa subsp. j... [more]
RL40_ARATH5.143e-2498.0860S ribosomal protein L40 OS=Arabidopsis thaliana ... [more]
RL40_BRARA1.146e-2398.0860S ribosomal protein L40 OS=Brassica rapa PE=3 SV... [more]
RL40_CHLRE1.072e-2188.4660S ribosomal protein L40 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_G08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934221 ID=CK934221; Name=CK934221; organism=Citrus sinensis; type=EST; length=704bp
GGGGGTCCTTGGAAAATCATCAGAGCGTGAAGATGCAGATCTTCGTGAAA
ACCCTAACCGGAAAGACCATAACTCTCGAAGTCGAGAGCAGCGACACCAT
CGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATTCCCCCGGATC
AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACCTTG
GCTGATTACAATATTCAGAAAGAATCCACTCTTCATTTGGTGCTGAGGCT
TAGGGGAGGTATCATTGAGCCTTCATTGATGGCTTTGGCTCGCAAATACA
ATCAGGATAAGATGATTTGCCGCAAATGTTATGCTCGTCTGCATCCCAGG
GCTGTAAATTGCCGGAAGAAGAAATGTGGCCACAGCAATCAGTTGAGGCC
TAAGAAGAAGATCAAGTAGACCACTTGCCTTAGTCATGATATGTGCCTTC
AGAGAGACATTCCAATTATGAGATGTATTTTGTTTGTTTTTTAATAGGAT
TTGGGATTTGAATTAAGCGATCATCTAAGTTGGATTGTAGTTGATTCAGT
TCAAGTGCAATTCTGTTAAACTTTTACGGATTTATATCAAATTGGGATAC
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGCAAAAAAA
AGAAAAATAAAAAAAAAAAAAAANNNNGGAAAAAAAAAAAAAAAAAAAAA
AAAA
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