CK934222

Overview
NameCK934222
Unique NameCK934222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_GOSBA (DNA-directed RNA polymerase subunit beta' OS=Gossypium barbadense GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPLKELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_DRANE (DNA-directed RNA polymerase subunit beta' OS=Draba nemorosa GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPLKELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_DIOEL (DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130
            C  THVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct:  111 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 145          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_DAUCA (DNA-directed RNA polymerase subunit beta' OS=Daucus carota GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPLKELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_CUCSA (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPLKELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_CRUWA (DNA-directed RNA polymerase subunit beta' OS=Crucihimalaya wallichii GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPLKELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_CHLSC (DNA-directed RNA polymerase subunit beta' OS=Chloranthus spicatus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130
            C  THVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 145          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_CERDE (DNA-directed RNA polymerase subunit beta' OS=Ceratophyllum demersum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPLKELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_CARPA (DNA-directed RNA polymerase subunit beta' OS=Carica papaya GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPLKELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_CAPBU (DNA-directed RNA polymerase subunit beta' OS=Capsella bursa-pastoris GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPLKELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149          
The following BLAST results are available for this feature:
BLAST of CK934222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RPOC1_GOSBA2.138e-1387.18DNA-directed RNA polymerase subunit beta' OS=Gossy... [more]
RPOC1_DRANE2.138e-1387.18DNA-directed RNA polymerase subunit beta' OS=Draba... [more]
RPOC1_DIOEL2.138e-1394.29DNA-directed RNA polymerase subunit beta' OS=Diosc... [more]
RPOC1_DAUCA2.138e-1387.18DNA-directed RNA polymerase subunit beta' OS=Daucu... [more]
RPOC1_CUCSA2.138e-1387.18DNA-directed RNA polymerase subunit beta' OS=Cucum... [more]
RPOC1_CRUWA2.138e-1387.18DNA-directed RNA polymerase subunit beta' OS=Cruci... [more]
RPOC1_CHLSC2.138e-1394.29DNA-directed RNA polymerase subunit beta' OS=Chlor... [more]
RPOC1_CERDE2.138e-1387.18DNA-directed RNA polymerase subunit beta' OS=Cerat... [more]
RPOC1_CARPA2.138e-1387.18DNA-directed RNA polymerase subunit beta' OS=Caric... [more]
RPOC1_CAPBU2.138e-1387.18DNA-directed RNA polymerase subunit beta' OS=Capse... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004261_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934222 ID=CK934222; Name=CK934222; organism=Citrus sinensis; type=EST; length=378bp
GCGGGGGGATACATAAAACTGTGGATGCCNNNTAACCCACGTGTGGTATT
TGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAA
GAATTAGAAGGCCTAGTATATTGCGATGTGTGATTTGATCGAAATTTTGA
TTTTACAGATTCGAAATATGAAACTGTCATCCCAGGCAATCGAATTGGGA
TGCCCTGAACCTGACATGTCTCTTTGGAGGAGTCACATGAAGCTCAGACC
GATGGGTGTATTCAATACTCCCCCCAAAAACGAAAAAGGGGAATTGGTCT
ATGGGCGATTCAGTAAAAAATAAATAAGAATTTCTAGTTGTACCTCGTGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top