CK934222
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_BARVE (DNA-directed RNA polymerase subunit beta' OS=Barbarea verna GN=rpoC1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ATRBE (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna GN=rpoC1 PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ARATH (DNA-directed RNA polymerase subunit beta' OS=Arabidopsis thaliana GN=rpoC1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ARAHI (DNA-directed RNA polymerase subunit beta' OS=Arabis hirsuta GN=rpoC1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_AETCO (DNA-directed RNA polymerase subunit beta' OS=Aethionema cordifolium GN=rpoC1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ACOGR (DNA-directed RNA polymerase subunit beta' OS=Acorus gramineus GN=rpoC1 PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ACOCL (DNA-directed RNA polymerase subunit gamma OS=Acorus calamus GN=rpoC1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ACOAM (DNA-directed RNA polymerase subunit beta' OS=Acorus americanus GN=rpoC1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_PHAAO (DNA-directed RNA polymerase subunit beta' OS=Phalaenopsis aphrodite subsp. formosana GN=rpoC1 PE=3 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13 Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRN 145 C THVWYLKRLPSYIANLLDKPL+ELEGLVYCD F R+ Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLRELEGLVYCDFSFARS 150
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_EUCGG (DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus GN=rpoC1 PE=3 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13 Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIAN+LDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANILDKPLKELEGLVYCDFSFAR 149 The following BLAST results are available for this feature:
BLAST of CK934222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK934222 ID=CK934222; Name=CK934222; organism=Citrus sinensis; type=EST; length=378bpback to top |