CK934222

Overview
NameCK934222
Unique NameCK934222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_NUPAD (DNA-directed RNA polymerase subunit beta' OS=Nuphar advena GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.061e-12
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANL DKPLKELEGLVYCD  F R
Sbjct:  118 CPVTHVWYLKRLPSYIANLSDKPLKELEGLVYCDFSFAR 156          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_AETGR (DNA-directed RNA polymerase subunit beta' OS=Aethionema grandiflora GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.061e-12
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPLKELE LVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLKELESLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SILLA (DNA-directed RNA polymerase subunit beta' OS=Silene latifolia GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 34/43 (79.07%), Postives = 34/43 (79.07%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNFDF 154
            C  THVWYLKRLPSYIAN LDKPLKELEGLVYCD     NF F
Sbjct:  111 CPVTHVWYLKRLPSYIANFLDKPLKELEGLVYCDY---PNFSF 150          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_AMBTC (DNA-directed RNA polymerase subunit beta' OS=Amborella trichopoda GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANL D+PLKELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLSDRPLKELEGLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_DRIGR (DNA-directed RNA polymerase subunit beta' OS=Drimys granadensis GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.087e-12
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWY KRLPSYIANLLDKPLKELE LVYCD  F R
Sbjct:  111 CPVTHVWYFKRLPSYIANLLDKPLKELESLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_COFAR (DNA-directed RNA polymerase subunit beta' OS=Coffea arabica GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.032e-12
Identity = 34/43 (79.07%), Postives = 34/43 (79.07%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNFDF 154
            C  THVWYLKRLPSYIANLLDK LKELEGLVYCD     NF F
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKSLKELEGLVYCDY---LNFSF 150          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_JASNU (DNA-directed RNA polymerase subunit beta' OS=Jasminum nudiflorum GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.266e-12
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPLKELEGLVY D  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYRDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SOYBN (DNA-directed RNA polymerase subunit beta' OS=Glycine max GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.983e-12
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDK LKELE LVYCD  F R
Sbjct:  111 CLVTHVWYLKRLPSYIANLLDKSLKELESLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_PHYPA (DNA-directed RNA polymerase subunit beta' OS=Physcomitrella patens GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130
            C  THVWYLKRLPSYIANLL KPLKELE LVYCD+
Sbjct:  108 CPVTHVWYLKRLPSYIANLLAKPLKELESLVYCDL 142          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_PHAVU (DNA-directed RNA polymerase subunit beta' OS=Phaseolus vulgaris GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  TH WYLKRLPSYIANLLDKPLKELE LVY DV F R
Sbjct:  111 CLVTHAWYLKRLPSYIANLLDKPLKELESLVYGDVSFAR 149          
The following BLAST results are available for this feature:
BLAST of CK934222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RPOC1_NUPAD1.061e-1284.62DNA-directed RNA polymerase subunit beta' OS=Nupha... [more]
RPOC1_AETGR1.061e-1284.62DNA-directed RNA polymerase subunit beta' OS=Aethi... [more]
RPOC1_SILLA1.386e-1279.07DNA-directed RNA polymerase subunit beta' OS=Silen... [more]
RPOC1_AMBTC2.364e-1282.05DNA-directed RNA polymerase subunit beta' OS=Ambor... [more]
RPOC1_DRIGR3.087e-1282.05DNA-directed RNA polymerase subunit beta' OS=Drimy... [more]
RPOC1_COFAR4.032e-1279.07DNA-directed RNA polymerase subunit beta' OS=Coffe... [more]
RPOC1_JASNU5.266e-1284.62DNA-directed RNA polymerase subunit beta' OS=Jasmi... [more]
RPOC1_SOYBN8.983e-1282.05DNA-directed RNA polymerase subunit beta' OS=Glyci... [more]
RPOC1_PHYPA2.001e-1185.71DNA-directed RNA polymerase subunit beta' OS=Physc... [more]
RPOC1_PHAVU2.001e-1182.05DNA-directed RNA polymerase subunit beta' OS=Phase... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934222 ID=CK934222; Name=CK934222; organism=Citrus sinensis; type=EST; length=378bp
GCGGGGGGATACATAAAACTGTGGATGCCNNNTAACCCACGTGTGGTATT
TGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAA
GAATTAGAAGGCCTAGTATATTGCGATGTGTGATTTGATCGAAATTTTGA
TTTTACAGATTCGAAATATGAAACTGTCATCCCAGGCAATCGAATTGGGA
TGCCCTGAACCTGACATGTCTCTTTGGAGGAGTCACATGAAGCTCAGACC
GATGGGTGTATTCAATACTCCCCCCAAAAACGAAAAAGGGGAATTGGTCT
ATGGGCGATTCAGTAAAAAATAAATAAGAATTTCTAGTTGTACCTCGTGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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