CK934222

Overview
NameCK934222
Unique NameCK934222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_MARPO (DNA-directed RNA polymerase subunit beta' OS=Marchantia polymorpha GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130
            C  THVWYLKRLPSYIANLL KPLKELE LVYCD+
Sbjct:  111 CSVTHVWYLKRLPSYIANLLAKPLKELESLVYCDL 145          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ANTFO (DNA-directed RNA polymerase subunit beta' OS=Anthoceros formosae GN=rpoC1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130
            C  THVWYLKRLPSYIANLL KPLKELE LVYCD+
Sbjct:  111 CPVTHVWYLKRLPSYIANLLAKPLKELESLVYCDL 145          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_WHEAT (DNA-directed RNA polymerase subunit beta' OS=Triticum aestivum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLK LPSYIANLLDKPLK+LEGLVY D  F R
Sbjct:  111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SORBI (DNA-directed RNA polymerase subunit beta' OS=Sorghum bicolor GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLK LPSYIANLLDKPLK+LEGLVY D  F R
Sbjct:  111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SACOF (DNA-directed RNA polymerase subunit beta' OS=Saccharum officinarum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLK LPSYIANLLDKPLK+LEGLVY D  F R
Sbjct:  111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SACHY (DNA-directed RNA polymerase subunit beta' OS=Saccharum hybrid GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLK LPSYIANLLDKPLK+LEGLVY D  F R
Sbjct:  111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_PSINU (DNA-directed RNA polymerase subunit beta' OS=Psilotum nudum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130
            C  THVWYLKRLPSYIANLL KPL +LE LVYCD+
Sbjct:  111 CPVTHVWYLKRLPSYIANLLAKPLNDLESLVYCDI 145          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYSJ (DNA-directed RNA polymerase subunit beta' OS=Oryza sativa subsp. japonica GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLK LPSYIANLLDKPLK+LEGLVY D  F R
Sbjct:  111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYSI (DNA-directed RNA polymerase subunit beta' OS=Oryza sativa subsp. indica GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLK LPSYIANLLDKPLK+LEGLVY D  F R
Sbjct:  111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYSA (DNA-directed RNA polymerase subunit beta' OS=Oryza sativa GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLK LPSYIANLLDKPLK+LEGLVY D  F R
Sbjct:  111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149          
The following BLAST results are available for this feature:
BLAST of CK934222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RPOC1_MARPO2.001e-1185.71DNA-directed RNA polymerase subunit beta' OS=March... [more]
RPOC1_ANTFO2.001e-1185.71DNA-directed RNA polymerase subunit beta' OS=Antho... [more]
RPOC1_WHEAT9.931e-1179.49DNA-directed RNA polymerase subunit beta' OS=Triti... [more]
RPOC1_SORBI9.931e-1179.49DNA-directed RNA polymerase subunit beta' OS=Sorgh... [more]
RPOC1_SACOF9.931e-1179.49DNA-directed RNA polymerase subunit beta' OS=Sacch... [more]
RPOC1_SACHY9.931e-1179.49DNA-directed RNA polymerase subunit beta' OS=Sacch... [more]
RPOC1_PSINU9.931e-1180.00DNA-directed RNA polymerase subunit beta' OS=Psilo... [more]
RPOC1_ORYSJ9.931e-1179.49DNA-directed RNA polymerase subunit beta' OS=Oryza... [more]
RPOC1_ORYSI9.931e-1179.49DNA-directed RNA polymerase subunit beta' OS=Oryza... [more]
RPOC1_ORYSA9.931e-1179.49DNA-directed RNA polymerase subunit beta' OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934222 ID=CK934222; Name=CK934222; organism=Citrus sinensis; type=EST; length=378bp
GCGGGGGGATACATAAAACTGTGGATGCCNNNTAACCCACGTGTGGTATT
TGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAA
GAATTAGAAGGCCTAGTATATTGCGATGTGTGATTTGATCGAAATTTTGA
TTTTACAGATTCGAAATATGAAACTGTCATCCCAGGCAATCGAATTGGGA
TGCCCTGAACCTGACATGTCTCTTTGGAGGAGTCACATGAAGCTCAGACC
GATGGGTGTATTCAATACTCCCCCCAAAAACGAAAAAGGGGAATTGGTCT
ATGGGCGATTCAGTAAAAAATAAATAAGAATTTCTAGTTGTACCTCGTGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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