CK934222

Overview
NameCK934222
Unique NameCK934222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYNI (DNA-directed RNA polymerase subunit beta' OS=Oryza nivara GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLK LPSYIANLLDKPLK+LEGLVY D  F R
Sbjct:  111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149
[Close]
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_MAIZE (DNA-directed RNA polymerase subunit beta' OS=Zea mays GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLK LPSYIANLLDKPLK+LEGLVY D  F R
Sbjct:  111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149
[Close]
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_LOLPR (DNA-directed RNA polymerase subunit beta' OS=Lolium perenne GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLK LPSYIANLLDKPLK+LEGLVY D  F R
Sbjct:  111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149
[Close]
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_HORVU (DNA-directed RNA polymerase subunit beta' OS=Hordeum vulgare GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLK LPSYIANLLDKPLK+LEGLVY D  F R
Sbjct:  111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149
[Close]
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_BRADI (DNA-directed RNA polymerase subunit beta' OS=Brachypodium distachyon GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLK LPSYIANLLDKPLK+LEGLVY D  F R
Sbjct:  111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149
[Close]
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ANEMR (DNA-directed RNA polymerase subunit beta' OS=Aneura mirabilis GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 2 
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130
            C  THVWYLKRLPS IANLLDKPLKELE LV+CD+
Sbjct:  111 CPVTHVWYLKRLPSCIANLLDKPLKELESLVHCDL 145
[Close]
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_AGRST (DNA-directed RNA polymerase subunit beta' OS=Agrostis stolonifera GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLK LPSYIANLLDKPLK+LEGLVY D  F R
Sbjct:  111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149
[Close]
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ADICA (DNA-directed RNA polymerase subunit beta' OS=Adiantum capillus-veneris GN=rpoC1 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 2 
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130
            C  THVW+LKR+PSYIANLL KPLKELE LVYCD+
Sbjct:  111 CPVTHVWFLKRIPSYIANLLAKPLKELESLVYCDL 145
The following BLAST results are available for this feature:
BLAST of CK934222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RPOC1_ORYNI9.931e-1179.49DNA-directed RNA polymerase subunit beta' OS=Oryza... [more]
RPOC1_MAIZE9.931e-1179.49DNA-directed RNA polymerase subunit beta' OS=Zea m... [more]
RPOC1_LOLPR9.931e-1179.49DNA-directed RNA polymerase subunit beta' OS=Loliu... [more]
RPOC1_HORVU9.931e-1179.49DNA-directed RNA polymerase subunit beta' OS=Horde... [more]
RPOC1_BRADI9.931e-1179.49DNA-directed RNA polymerase subunit beta' OS=Brach... [more]
RPOC1_ANEMR9.931e-1182.86DNA-directed RNA polymerase subunit beta' OS=Aneur... [more]
RPOC1_AGRST9.931e-1179.49DNA-directed RNA polymerase subunit beta' OS=Agros... [more]
RPOC1_ADICA9.931e-1180.00DNA-directed RNA polymerase subunit beta' OS=Adian... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934222 ID=CK934222; Name=CK934222; organism=Citrus sinensis; type=EST; length=378bp
GCGGGGGGATACATAAAACTGTGGATGCCNNNTAACCCACGTGTGGTATT
TGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAA
GAATTAGAAGGCCTAGTATATTGCGATGTGTGATTTGATCGAAATTTTGA
TTTTACAGATTCGAAATATGAAACTGTCATCCCAGGCAATCGAATTGGGA
TGCCCTGAACCTGACATGTCTCTTTGGAGGAGTCACATGAAGCTCAGACC
GATGGGTGTATTCAATACTCCCCCCAAAAACGAAAAAGGGGAATTGGTCT
ATGGGCGATTCAGTAAAAAATAAATAAGAATTTCTAGTTGTACCTCGTGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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