CK934227

Overview
NameCK934227
Unique NameCK934227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:21..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 407.912 bits (1047), Expect = 3.041e-113
Identity = 197/230 (85.65%), Postives = 212/230 (92.17%), Query Frame = 3
Query:   78 MATSTMGLSSS-FVGKAVNLAPSGNDLSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            MA STM LSSS F GKAV L+PS ++++  G+++MRKT SK+  VSS SPWYGP+RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFS+ GLDYLGNPSL+HAQSILAIWAC VVLMGAVEGYR+AG PLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFF
Sbjct:    1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 230          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 407.142 bits (1045), Expect = 5.187e-113
Identity = 199/230 (86.52%), Postives = 212/230 (92.17%), Query Frame = 3
Query:   78 MATSTMGLSSS-FVGKAVNLAPSGNDLSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            MA +TM +SSS F GKAVN+ PS + ++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVWFKAG+QIFSE GLDYLGNPSL+HAQSILAIWAC VVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF
Sbjct:    1 MAAATMAISSSSFAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 229          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 1.509e-112
Identity = 199/227 (87.67%), Postives = 209/227 (92.07%), Query Frame = 3
Query:   81 ATSTMGLSS-SFVGKAVNLAPSGNDLSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            A S+M LSS S  GKAV L PS  ++   GR+SMRKT +K VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSE GLDYLGNPSLIHAQSILAIWA  V+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFF
Sbjct:    3 AASSMALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF 226          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 3.362e-112
Identity = 190/217 (87.56%), Postives = 203/217 (93.55%), Query Frame = 3
Query:  108 SFVGKAVNLAPSGNDLSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            +  G+AV L+P+  ++    + +MRKT SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSE GLDYLGNPSL+HAQSILAIWAC VVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFF
Sbjct:    2 TLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF 218          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 4.391e-112
Identity = 195/230 (84.78%), Postives = 210/230 (91.30%), Query Frame = 3
Query:   78 MATSTMGLSSS-FVGKAVNLAPSGNDLSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            MA +TM LSSS F GKAV L+ S ++++  G+++MRKT +K+   SS SPWYGPDRVKYLGPFSGE PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEAVWFKAGAQIFSE GLDYLGNPSL+HAQSILAIWAC VVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFF
Sbjct:    1 MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 230          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 9.783e-112
Identity = 194/230 (84.35%), Postives = 209/230 (90.87%), Query Frame = 3
Query:   78 MATSTMGLSSS-FVGKAVNLAPSGNDLSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            MA +TM LSSS F GK V L+PS ++++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVW KAG+QIFSE GLDYLGNPSL+HAQSILAIWAC V+LMGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAFAELKVKE KNGRLAMFSMFGFF
Sbjct:    1 MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFF 230          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 2.179e-111
Identity = 195/230 (84.78%), Postives = 211/230 (91.74%), Query Frame = 3
Query:   78 MATSTMGLSSS-FVGKAVNLAPSGNDLSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            MA +TM LSSS F GKAVN+ PS ++++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIHCRW MLGALGCVFPEL ARNGVKFGEAVWFKAG+QIF E GLDYLGNPSL+HAQSILAIWAC VVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAEL+VKEIKNGRLAMFSMFGFF
Sbjct:    1 MAAATMALSSSSFAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFF 229          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 4.544e-109
Identity = 194/231 (83.98%), Postives = 208/231 (90.04%), Query Frame = 3
Query:   78 MATSTMGLSSS-FVGKAVNLAPSGNDLSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            MA+STM LSS+ F GKAVN+  S   L    R++MRKT +K+    SSGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSE GLDYLGNPSLIHAQSILAIWAC VVLMGA+EGYR+AGGPLGEV DPLYPGG+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGFF
Sbjct:    1 MASSTMALSSTAFAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFF 228          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 7.751e-109
Identity = 195/231 (84.42%), Postives = 205/231 (88.74%), Query Frame = 3
Query:   78 MATSTMGLSSS-FVGKAVNLAPSGNDLSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            MA+STM LSS+ F GKAVN+  S        R++MRKT +K+    +SGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSE GLDYLGNPSLIHAQSILAIWAC VVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAF ELKVKE+K GRLAM SMFGFF
Sbjct:    1 MASSTMALSSTAFAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFF 228          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 1.322e-108
Identity = 192/229 (83.84%), Postives = 205/229 (89.52%), Query Frame = 3
Query:   78 MATSTMGLSS-SFVGKAVNLAPSGNDLSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            MA STM LSS +F GKAV L+P  +++   GR++MRKT   +  SGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSE GLDYLGNPSL+HAQSILAIWA  V+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFF
Sbjct:    1 MAASTMALSSPAFAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFF 229          
The following BLAST results are available for this feature:
BLAST of CK934227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB23_NICPL3.041e-11385.65Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB24_PETSP5.187e-11386.52Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_SOYBN1.509e-11287.67Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_CUCSA3.362e-11287.56Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_PETSP4.391e-11284.78Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_PETSP9.783e-11284.35Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_PETSP2.179e-11184.78Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB29_MAIZE4.544e-10983.98Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_MAIZE7.751e-10984.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL1.322e-10883.84Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_H03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934227 ID=CK934227; Name=CK934227; organism=Citrus sinensis; type=EST; length=761bp
GGGGACAACCAACAGCCTTTCTTGCTTNNACAGCTTCTGTTGCTTACACA
GCTTCTGCTTCTCAATTAAATCCCTCAATGGCAACCTCGACCATGGGTCT
CTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATG
ACCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCT
GTTTCTTCGGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGG
TCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTG
ACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCC
AAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGC
TCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCG
GTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGACGGG
CTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGC
CATCTGGGCTTGCCTGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAA
TTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGC
AGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCT
CAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTG
GTTTCTTCGGT
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