CK934227

Overview
NameCK934227
Unique NameCK934227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:21..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 321.242 bits (822), Expect = 3.743e-87
Identity = 161/210 (76.67%), Postives = 177/210 (84.29%), Query Frame = 3
Query:   78 MATSTMGLSSSFVGKAVNLAPSGNDL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 692
            MATST+   S+F G+ + L P  N+L      NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF E GLDYLGNP+L+HAQSILAIWAC VVLMGAVEGYR+ GGPLGE  D LYPGG+FDPLGLA+DPEAF
Sbjct:    1 MATSTIQ-QSAFAGQTL-LKPQ-NELVRKVGGNGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.246e-82
Identity = 161/215 (74.88%), Postives = 171/215 (79.53%), Query Frame = 3
Query:  114 VGKAVNLAPSGNDLSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSE GLDYLGNPSL+HAQSILAIW   V+LMGAVEGYRIA GPLGEVTDPLYP GSFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFF
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFF 231          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.378e-81
Identity = 147/197 (74.62%), Postives = 166/197 (84.26%), Query Frame = 3
Query:  180 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            +KT +K+    SSG  +YGP+R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSE GLDYLGNPSL+HAQ+I+A  A  V+LMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLA FSMFGFF
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFF 216          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.990e-80
Identity = 145/186 (77.96%), Postives = 158/186 (84.95%), Query Frame = 3
Query:  204 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            S+G  WYGPDR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSE GLDYLG+P+LIHAQ+I+A  A  VVLMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLAMFS FGFF
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFF 219          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.334e-76
Identity = 150/229 (65.50%), Postives = 174/229 (75.98%), Query Frame = 3
Query:   81 ATSTMGLSSSFVGKAVNLAPSGNDLSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            +++T+  ++ F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+ GLDYLGNP+L+HAQSILA+    VVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFF
Sbjct:    9 SSTTVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFF 228          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.883e-76
Identity = 153/232 (65.95%), Postives = 175/232 (75.43%), Query Frame = 3
Query:   78 MATSTMGLSS-SFVGKAVNLAPSGNDLSNGGRISMRKTGSKSVSSGSP-WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            MA++ M  +S + V K   L+  G   S      +    +  ++ G+  WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSE GLDYLGNP+L+HAQSILA+    V+LMG VEG+RI G   +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFF
Sbjct:    1 MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 231          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 7.093e-70
Identity = 132/184 (71.74%), Postives = 150/184 (81.52%), Query Frame = 3
Query:  219 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            +YGPDR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++ GL+YLGN SLIHAQSI+A  A  VVLMG  E YR  GG  G  +  D LYPGG FDPLGLADDP+ FAELKVKEIKNGRLAMFS  GFF
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFF 216          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.340e-67
Identity = 131/194 (67.53%), Postives = 149/194 (76.80%), Query Frame = 3
Query:  183 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            K  SKS SS + +YGPD          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +WFKAGA IF + GL+YLGNPSLIHAQ+I+A  A  VVLMG VEGYR+ GGP GE  DPLYPG +FDPLGLADDP+ FAELKVKEIKNGRLAMF+  GFF
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFF 237          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.344e-52
Identity = 99/113 (87.61%), Postives = 104/113 (92.04%), Query Frame = 3
Query:  420 ELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            ELL +NGVKFGEAVWFKAGAQIFSE GLDYLGNP+LIHAQSILAIWAC VVLMG +EGYR+ GGPLGE  DPLYPG +FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFF
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFF 113          
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.150e-42
Identity = 104/197 (52.79%), Postives = 120/197 (60.91%), Query Frame = 3
Query:  192 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758
            SK+VS  S     WYGPDR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +   + L+Y G    I    +LA+ A  VVL+G  E YRI  G   +  D L+PGG FDPLGLA DPE  A LKVKEIKNGRLAMF+M GFF
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFF 240          
The following BLAST results are available for this feature:
BLAST of CK934227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB21_SILPR3.743e-8776.67Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_MALDO1.246e-8274.88Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLRE1.378e-8174.62Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO1.990e-8077.96Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC1.334e-7665.50Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU3.883e-7665.95Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE7.093e-7071.74Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA7.340e-6767.53Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY1.344e-5287.61Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH2.150e-4252.79Chlorophyll a-b binding protein CP26, chloroplasti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004261_H03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934227 ID=CK934227; Name=CK934227; organism=Citrus sinensis; type=EST; length=761bp
GGGGACAACCAACAGCCTTTCTTGCTTNNACAGCTTCTGTTGCTTACACA
GCTTCTGCTTCTCAATTAAATCCCTCAATGGCAACCTCGACCATGGGTCT
CTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATG
ACCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCT
GTTTCTTCGGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGG
TCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTG
ACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCC
AAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGC
TCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCG
GTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGACGGG
CTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGC
CATCTGGGCTTGCCTGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAA
TTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGC
AGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCT
CAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTG
GTTTCTTCGGT
back to top