CK934227
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.595e-37 Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 3 Query: 522 SLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 SL+HAQSILAIWAC VVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFF Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 230
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.595e-37 Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 3 Query: 522 SLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 SL+HAQSILAIWAC VVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFF Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 230
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.595e-37 Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 3 Query: 522 SLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 SL+HAQSILAIWAC VVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFF Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 79
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.595e-37 Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 3 Query: 522 SLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 SL+HAQSILAIWAC VVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFF Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 228
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.595e-37 Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 3 Query: 522 SLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 SL+HAQSILAIWAC VVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFF Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 228
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.546e-35 Identity = 74/87 (85.06%), Postives = 77/87 (88.51%), Query Frame = 3 Query: 501 LDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 LDYLGNPSL+HAQSILAIWA V+LMGAVEGYR+AG GPLGE D LYPGGSFDPL DPEAFAELKVKEIKNGRLAMFSMFGFF Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFF 87
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.146e-27 Identity = 91/233 (39.06%), Postives = 113/233 (48.50%), Query Frame = 3 Query: 78 MATSTMGLSSSFVGKAVNLAPSGNDLSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDG-LDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVT--DP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 755 MA+S+ S S VG LAPS +G T S V+ + W F G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA DG YLGNP W L ++ A+E IA DP YPGG+FDPLG + DP F ELK+KEIKNGRLAM + GF Sbjct: 1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP---------VPWGNLPTIL-AIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGF 205
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.022e-24 Identity = 73/183 (39.89%), Postives = 97/183 (53.01%), Query Frame = 3 Query: 228 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWA-----CLVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFG 752 PDR + F G PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q + D +L + +L WA ++ G V I TD YPGG FDPLG + P EL+ KEIKNGRLAM ++ G Sbjct: 63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEYFTD------TTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.883e-24 Identity = 76/196 (38.78%), Postives = 100/196 (51.02%), Query Frame = 3 Query: 189 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWA-----CLVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFG 752 GS+SV+ + PDR + F G PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q + D +L + +L WA ++ G V I TD YPGG FDPLG + P EL+ KEIKNGRLAM ++ G Sbjct: 50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEYFTD------TTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.004e-23 Identity = 70/167 (41.92%), Postives = 89/167 (53.29%), Query Frame = 3 Query: 261 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDG-LDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 755 G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L G W KA G YLG P + ++ I A + + VE R + YPGG+FDPLG + DP F ELKVKEIKNGRLA+ ++ GF Sbjct: 52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGF 206 The following BLAST results are available for this feature:
BLAST of CK934227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934227 ID=CK934227; Name=CK934227; organism=Citrus sinensis; type=EST; length=761bpback to top |