CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: GLH2_CAEEL (ATP-dependent RNA helicase glh-2 OS=Caenorhabditis elegans GN=glh-2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.500e-20
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  514 GINFDAYEDIPVETSGENVPPPVNT---FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            G+ F+ + D  V+ + +  P  V T   F+E +LGE +  N+    Y K TP+Q++ +P+   G D+MACAQTGSGKTAAF  PI++ ++ E  +    G    YP  +IL PTREL+ QI++E
Sbjct:  526 GLMFNKFFDAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDL-NTAGEGGCYPRCIILTPTRELTDQIYNE 648          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH41_ARATH (DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis thaliana GN=RH41 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 54/114 (47.37%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  538 DIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            DI V+  G  VPPPV TF    L  +L LN+    Y  PTP+Q  AIP ++ G+ L+A A TGSGKTA+F  PIIS      + + P   R   PLA++LAPTREL  Q+ D+A
Sbjct:   95 DIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISR-CTTYHSEHPSDQRR-NPLAMVLAPTRELCVQVEDQA 206          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH24_ORYSJ (DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica GN=Os03g0308500 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 53/143 (37.06%), Postives = 81/143 (56.64%), Query Frame = 1
Query:  451 EVNPFGDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            E  PF  D   E+P     +     D  + + +  SG +VP P+ +FA+     +L   I +  Y KPT +Q  A+PI ++GRD++  A+TGSGKTAAF  P+I  IM +  +++  G     P+ ++ APTREL+ QI+ EA
Sbjct:  175 EYEPFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEG-----PIGVVCAPTRELAHQIYLEA 312          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: GLH3_CAEEL (ATP-dependent RNA helicase glh-3 OS=Caenorhabditis elegans GN=glh-3 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = 1
Query:  508 NTGINFDAYEDIPVETSGENVP---PPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGAR-TVYPLALILAPTRELSSQIHDE 876
            N G  FD + D  V+      P    P  +F++ D+ + +  N+ R  Y + TP+Q++ +P+   G+D++ACAQTGSGKTAAF  PI+S ++ E+ +    GA    YP  +IL PTREL+ QI++E
Sbjct:  270 NAGDFFDKFFDASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLN--YGAEGGCYPRCIILTPTRELADQIYNE 394          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: GLH1_CAEEL (ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans GN=glh-1 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 7.195e-19
Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  514 GINFDAYEDIPVE-TSGENVP--PPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            G+ F+ + D  V+ TS E      P  TFAE +L E +  N+    Y K TP+Q++A+P+   G D+MACAQTGSGKTAAF  PI++ ++ +  +    G    YP  +IL PTREL+ QI++E
Sbjct:  315 GLMFNKFFDAEVKLTSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNL-NTAGEGGCYPRCIILTPTRELADQIYNE 437          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_ASPNC (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp28 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + T G +VP P+ ++ E +L + L   I R  Y +PTP+QR AIPI++  RDL+  A TGSGKTAAF  P++  I     +      +   P A++LAPTREL+ QI  EA
Sbjct:  356 EDFNISTKGGSVPNPMRSWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKADGPYAIVLAPTRELAQQIEIEA 470          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX42_PONAB (ATP-dependent RNA helicase DDX42 OS=Pongo abelii GN=DDX42 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 1
Query:  526 DAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            D    + +  SG   P P ++FA     E+L   IR+ +Y +PTP+Q   +P++++GRD++  A+TGSGKTAAF +P++  IM ++ ++   G     P+A+I+ PTREL  QIH E
Sbjct:  234 DLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG-----PIAVIVCPTRELCQQIHAE 345          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX42_MOUSE (ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 1
Query:  526 DAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            D    + +  SG   P P ++FA     E+L   IR+ +Y +PTP+Q   +P++++GRD++  A+TGSGKTAAF +P++  IM ++ ++   G     P+A+I+ PTREL  QIH E
Sbjct:  234 DLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG-----PIAVIVCPTRELCQQIHAE 345          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX42_HUMAN (ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 1
Query:  526 DAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            D    + +  SG   P P ++FA     E+L   IR+ +Y +PTP+Q   +P++++GRD++  A+TGSGKTAAF +P++  IM ++ ++   G     P+A+I+ PTREL  QIH E
Sbjct:  234 DLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG-----PIAVIVCPTRELCQQIHAE 345          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX42_CHICK (ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 45/110 (40.91%), Postives = 71/110 (64.55%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +  SG   P P ++FA     E+L   IR+ +Y +PTP+Q   +P++++GRD++  A+TGSGKTAAF +P++  IM ++ ++   G     P+A+I+ PTREL  QIH E
Sbjct:  241 LRVSGAAPPRPGSSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG-----PIAVIVCPTRELCQQIHSE 345          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GLH2_CAEEL8.500e-2041.13ATP-dependent RNA helicase glh-2 OS=Caenorhabditis... [more]
RH41_ARATH5.509e-1947.37DEAD-box ATP-dependent RNA helicase 41 OS=Arabidop... [more]
RH24_ORYSJ5.509e-1937.06DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sa... [more]
GLH3_CAEEL5.509e-1939.37ATP-dependent RNA helicase glh-3 OS=Caenorhabditis... [more]
GLH1_CAEEL7.195e-1942.74ATP-dependent RNA helicase glh-1 OS=Caenorhabditis... [more]
PRP28_ASPNC6.091e-1843.48Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
DDX42_PONAB6.091e-1839.32ATP-dependent RNA helicase DDX42 OS=Pongo abelii G... [more]
DDX42_MOUSE6.091e-1839.32ATP-dependent RNA helicase DDX42 OS=Mus musculus G... [more]
DDX42_HUMAN6.091e-1839.32ATP-dependent RNA helicase DDX42 OS=Homo sapiens G... [more]
DDX42_CHICK6.091e-1840.91ATP-dependent RNA helicase DDX42 OS=Gallus gallus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
back to top