CK934523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: GLH2_CAEEL (ATP-dependent RNA helicase glh-2 OS=Caenorhabditis elegans GN=glh-2 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 8.500e-20 Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1 Query: 514 GINFDAYEDIPVETSGENVPPPVNT---FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 G+ F+ + D V+ + + P V T F+E +LGE + N+ Y K TP+Q++ +P+ G D+MACAQTGSGKTAAF PI++ ++ E + G YP +IL PTREL+ QI++E Sbjct: 526 GLMFNKFFDAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDL-NTAGEGGCYPRCIILTPTRELTDQIYNE 648
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH41_ARATH (DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis thaliana GN=RH41 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19 Identity = 54/114 (47.37%), Postives = 69/114 (60.53%), Query Frame = 1 Query: 538 DIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 DI V+ G VPPPV TF L +L LN+ Y PTP+Q AIP ++ G+ L+A A TGSGKTA+F PIIS + + P R PLA++LAPTREL Q+ D+A Sbjct: 95 DIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISR-CTTYHSEHPSDQRR-NPLAMVLAPTRELCVQVEDQA 206
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH24_ORYSJ (DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica GN=Os03g0308500 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19 Identity = 53/143 (37.06%), Postives = 81/143 (56.64%), Query Frame = 1 Query: 451 EVNPFGDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 E PF D E+P + D + + + SG +VP P+ +FA+ +L I + Y KPT +Q A+PI ++GRD++ A+TGSGKTAAF P+I IM + +++ G P+ ++ APTREL+ QI+ EA Sbjct: 175 EYEPFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEG-----PIGVVCAPTRELAHQIYLEA 312
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: GLH3_CAEEL (ATP-dependent RNA helicase glh-3 OS=Caenorhabditis elegans GN=glh-3 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19 Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = 1 Query: 508 NTGINFDAYEDIPVETSGENVP---PPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGAR-TVYPLALILAPTRELSSQIHDE 876 N G FD + D V+ P P +F++ D+ + + N+ R Y + TP+Q++ +P+ G+D++ACAQTGSGKTAAF PI+S ++ E+ + GA YP +IL PTREL+ QI++E Sbjct: 270 NAGDFFDKFFDASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLN--YGAEGGCYPRCIILTPTRELADQIYNE 394
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: GLH1_CAEEL (ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans GN=glh-1 PE=1 SV=3) HSP 1 Score: 94.7449 bits (234), Expect = 7.195e-19 Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 1 Query: 514 GINFDAYEDIPVE-TSGENVP--PPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 G+ F+ + D V+ TS E P TFAE +L E + N+ Y K TP+Q++A+P+ G D+MACAQTGSGKTAAF PI++ ++ + + G YP +IL PTREL+ QI++E Sbjct: 315 GLMFNKFFDAEVKLTSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNL-NTAGEGGCYPRCIILTPTRELADQIYNE 437
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_ASPNC (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp28 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18 Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + T G +VP P+ ++ E +L + L I R Y +PTP+QR AIPI++ RDL+ A TGSGKTAAF P++ I + + P A++LAPTREL+ QI EA Sbjct: 356 EDFNISTKGGSVPNPMRSWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKADGPYAIVLAPTRELAQQIEIEA 470
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX42_PONAB (ATP-dependent RNA helicase DDX42 OS=Pongo abelii GN=DDX42 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18 Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 1 Query: 526 DAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 D + + SG P P ++FA E+L IR+ +Y +PTP+Q +P++++GRD++ A+TGSGKTAAF +P++ IM ++ ++ G P+A+I+ PTREL QIH E Sbjct: 234 DLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG-----PIAVIVCPTRELCQQIHAE 345
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX42_MOUSE (ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3) HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18 Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 1 Query: 526 DAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 D + + SG P P ++FA E+L IR+ +Y +PTP+Q +P++++GRD++ A+TGSGKTAAF +P++ IM ++ ++ G P+A+I+ PTREL QIH E Sbjct: 234 DLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG-----PIAVIVCPTRELCQQIHAE 345
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX42_HUMAN (ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18 Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 1 Query: 526 DAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 D + + SG P P ++FA E+L IR+ +Y +PTP+Q +P++++GRD++ A+TGSGKTAAF +P++ IM ++ ++ G P+A+I+ PTREL QIH E Sbjct: 234 DLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG-----PIAVIVCPTRELCQQIHAE 345
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX42_CHICK (ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18 Identity = 45/110 (40.91%), Postives = 71/110 (64.55%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 + SG P P ++FA E+L IR+ +Y +PTP+Q +P++++GRD++ A+TGSGKTAAF +P++ IM ++ ++ G P+A+I+ PTREL QIH E Sbjct: 241 LRVSGAAPPRPGSSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG-----PIAVIVCPTRELCQQIHSE 345 The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 333
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bpback to top |