EY659723

Overview
NameEY659723
Unique NameEY659723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659723_ssr25 microsatellite EY659723_ssr25:25..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 89/211 (42.18%), Postives = 116/211 (54.98%), Query Frame = 3
Query:  267 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRTC-*HLSDPFATTA 878
            ++YGP+R  +L  G    +  P YLTGE PGDYG+D  GLS  P+ F +Y+  ELIHARWAMLGA G   PE   K G   G EAVWFK GA +     L+Y G    +   N+V     +++L+   E YR+  G   +  D L+PG  FDPLGLA     FA LK KEI+ G L  F+  G F   +   +G V+    HL++P    A
Sbjct:   35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNA 242          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 86/210 (40.95%), Postives = 117/210 (55.71%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYG DR ++L  G    S  P YL+GE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+   E YR+  G   +  D ++PGG FDPLGLA     FA LK KE++ G L  F+  G F   +   +G +     HL+DP    A
Sbjct:   49 WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNA 254          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.578e-32
Identity = 88/210 (41.90%), Postives = 115/210 (54.76%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVR-TC*HLSDPFATTA 878
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    +   +L+     ++VL+   E YRI  G   +  D L+PGG FDPLGLA     FA LK KEI+ G L  F+  G F   +   +G +     H++DP    A
Sbjct:   50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNA 255          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.691e-32
Identity = 91/211 (43.13%), Postives = 113/211 (53.55%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVLVXGA-EYYRITNGLDFG---DKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVW K G+ +     L+Y G    +    + A+ A  VL+ GA E YR+  G   G   D L+PGG FDPLGLA     FA LK KE + G L  F+  G F   +   +G +     HL DP    A
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGG-PLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNA 256          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.691e-32
Identity = 85/211 (40.28%), Postives = 114/211 (54.03%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGLDFG---DKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+   E YR+      G   D L+PGG FDPLGLA     FA LK KE++ G L  F+  G F   +   +G +     HL+DP    A
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 256          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.691e-32
Identity = 85/211 (40.28%), Postives = 114/211 (54.03%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGLDFG---DKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+   E YR+      G   D L+PGG FDPLGLA     FA LK KE++ G L  F+  G F   +   +G +     HL+DP    A
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 256          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.515e-32
Identity = 89/211 (42.18%), Postives = 115/211 (54.50%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGLDFG---DKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYGP+R  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+   E YR+  G   G   D L+PGG FDPLGLA     FA LK KEI+ G L  F+  G F   +   +G +     HL+DP    A
Sbjct:   51 WYGPNRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-GEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.515e-32
Identity = 86/210 (40.95%), Postives = 116/210 (55.24%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            W+GPD   +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+   E YRI  G   +  D L+PGG FDPLGLA     FA LK KE++ G L  F+  G F   +   +G +     HL+DP    A
Sbjct:   12 WHGPDGVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNA 217          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.591e-32
Identity = 81/184 (44.02%), Postives = 104/184 (56.52%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF 806
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    I    + A+ A +++L+   E YRI  G   +  D ++PGG FDPL LA     FA LK KEI+ G L  F+  G F
Sbjct:   29 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFF 208          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.830e-32
Identity = 94/222 (42.34%), Postives = 121/222 (54.50%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVLVXG-AEYYRITNGLD---FGDKLHPGGP-FDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRTC-*HLSDPFATTA*RISGTKKAP 908
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F++ +A E+IH RWAMLGA G + PE   K+      E VWFK G+ +     L+Y G    +    + AV+   VL+ G  E +RI NGLD    G+ L+PGG  FDPLGLA     FA LK KEI+ G L  F+  G F   +   +G +     HL DP A  A  +  TK AP
Sbjct:   50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNA-WVFATKFAP 266          
The following BLAST results are available for this feature:
BLAST of EY659723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB2_CHLRE1.578e-3242.18Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_POLMU1.578e-3240.95Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_WHEAT1.578e-3241.90Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP2.691e-3243.13Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_ARATH2.691e-3240.28Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH2.691e-3240.28Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_NICPL3.515e-3242.18Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_PEA3.515e-3240.95Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_SOYBN4.591e-3244.02Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB23_HORVU7.830e-3242.34Chlorophyll a-b binding protein of LHCII type III,... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659723 ID=EY659723; Name=EY659723; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCTAACACAATTACGCAGCAGCAGCAACACTCTGAAGATG
GCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGA
GATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTC
CAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAG
AAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGT
TAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGC
CCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAA
GTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGA
CGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCCAGATGGGCCA
TGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGT
GCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCT
TGATGGAAACACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTG
TTTTTGCTGTCATTGCTGAGATTGTTCTTGTANGTGGTGCTGAATATTAT
AGAATCACCAACGGTTTGGATTTTGGAGACAAGCTTCACCCAGGTGGTCC
ATTTGACCCACTGGGATTAGCAAANGGATCCTGACAATTTGCATTGCTAA
AGTNGAAGGAGATCAGAATGGGAGACTTGCCATGGTTCGCATGCCTGGGT
TCTTTCTCCAGGCTATGTCACAGTGAAGGTCAGGTGAGAACTTGCTAACA
TCTCAGTGATCCTTTTGCAACAACTGCTTAACGGATCTCCGGAACTAAAA
AAGCTCCACCTG
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