EY659723

Overview
NameEY659723
Unique NameEY659723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659723_ssr25 microsatellite EY659723_ssr25:25..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.023e-31
Identity = 86/211 (40.76%), Postives = 113/211 (53.55%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGLDFG---DKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+   E YR+      G   D L+PGG FDPLGLA     FA LK KEI+ G L  F+  G F   +   +G +     HL+DP    A
Sbjct:   49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.744e-31
Identity = 94/211 (44.55%), Postives = 116/211 (54.98%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNG-LDFG-DKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRTC-*HLSDPFATTA 878
            WYGPDR    P+ L   SE  P YLTGE PGDYG+D   +S  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    I    + A+ A ++VL+   E YR+  G L  G D L PGG FDPLGLA      A LK KEI+ G L  F+  G F   +   +G +     HL+DP A  A
Sbjct:   50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNA 255          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.886e-31
Identity = 87/211 (41.23%), Postives = 115/211 (54.50%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITN--GLDFGDKLHPGGP-FDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F+K +A E+IH RWAMLGA G I PE   K+      E VWFK G+ +     L+Y G    +    + AV+  ++VL+   E +RI    G+  G+ L+PGG  FDPLGLA     FA LK KEI+ G L  F+  G F   +   +G +     HL +P A  A
Sbjct:   47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNA 254          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.477e-30
Identity = 80/192 (41.67%), Postives = 108/192 (56.25%), Query Frame = 3
Query:  324 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+   E YRI  G   +  D ++PGG FDPLGLA     FA LK KE++ G L  F+  G F   +   +G +     HL+DP    A
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 195          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.519e-30
Identity = 80/186 (43.01%), Postives = 103/186 (55.38%), Query Frame = 3
Query:  267 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF 806
            ++YGPD       G   + + P   TGE PGDYG+D  GLS  P+ F +Y+  ELIHAR  +LGA G + PE   ++ G   G  A+WFK GA +     LNY G    I   N+V  +  ++VL+   E YR+  G   +  D L+PG  FDPLGLA     FA LK KEI+ G L  FACLG F
Sbjct:   56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFF 237          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.805e-28
Identity = 76/159 (47.80%), Postives = 95/159 (59.75%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVXGAEYYRITNG-LDFG-DKLHPGGPFDPLGLA 722
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+   E YR+  G L  G D+L+PGG FDPLGLA
Sbjct:   48 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNP---NLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLA 199          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.170e-27
Identity = 81/210 (38.57%), Postives = 111/210 (52.86%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYG DR ++L  G L  S  P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWA+    G + PE   + G   G E VWFK G+ +     L++ G    +    + A+ A ++VL+   E Y +  G   +  D L+ GG FDPLGL     +FA LK KEI+ G L  F+  G F   +   +G +     HL+DP    A
Sbjct:   48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNA 253          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.207e-26
Identity = 81/210 (38.57%), Postives = 108/210 (51.43%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYGPDR  +L        E P YLTGE          GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A +++L+   E YRI  G   +  D ++PGG FDPLGLA      A LK KE++ G L  F+  G F   +   +G +     HL+DP    A
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 245          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.162e-25
Identity = 71/166 (42.77%), Postives = 93/166 (56.02%), Query Frame = 3
Query:  324 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IAEIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF 806
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+R AM  A G I PE  +  G   G EAVWFK GA +     L+Y G    +    + A+   +++L+   E YRI  G   +  D L+PG  FD LGLA  +  FA LK KE++ G L  F+  G F
Sbjct:   68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFF 231          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.602e-19
Identity = 57/158 (36.08%), Postives = 79/158 (50.00%), Query Frame = 3
Query:  330 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVXGAEYYRITNGLDFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLG 800
            P YL G  PGD+G+D  GL + P +  +Y+  ELIH RWAML   G I+PEA      N      W       + G    Y G+ +P   +  ++A E + +   E+ R +   D   K +PGG FDPLG +    +F  LK KEI+ G L   A +G
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL--GNWVKAQEW-----AAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR-SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVG 205          
The following BLAST results are available for this feature:
BLAST of EY659723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB21_SINAL1.023e-3140.76Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PINTH1.744e-3144.55Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_SOLLC3.886e-3141.23Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_CUCSA1.477e-3041.67Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_DUNSA2.519e-3043.01Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SILPR1.805e-2847.80Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB48_MAIZE1.170e-2738.57Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_SOYBN2.207e-2638.57Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_MALDO4.162e-2542.77Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB11_SOLLC7.602e-1936.08Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659723 ID=EY659723; Name=EY659723; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCTAACACAATTACGCAGCAGCAGCAACACTCTGAAGATG
GCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGA
GATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTC
CAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAG
AAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGT
TAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGC
CCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAA
GTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGA
CGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCCAGATGGGCCA
TGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGT
GCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCT
TGATGGAAACACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTG
TTTTTGCTGTCATTGCTGAGATTGTTCTTGTANGTGGTGCTGAATATTAT
AGAATCACCAACGGTTTGGATTTTGGAGACAAGCTTCACCCAGGTGGTCC
ATTTGACCCACTGGGATTAGCAAANGGATCCTGACAATTTGCATTGCTAA
AGTNGAAGGAGATCAGAATGGGAGACTTGCCATGGTTCGCATGCCTGGGT
TCTTTCTCCAGGCTATGTCACAGTGAAGGTCAGGTGAGAACTTGCTAACA
TCTCAGTGATCCTTTTGCAACAACTGCTTAACGGATCTCCGGAACTAAAA
AAGCTCCACCTG
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