EY659723

Overview
NameEY659723
Unique NameEY659723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659723_ssr25 microsatellite EY659723_ssr25:25..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.212e-18
Identity = 60/158 (37.97%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  330 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVXGAEYYRITNGLDFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLG 800
            P +L G  PGD+G+DP GL+  P++F +++  E+ H RWAML   G ++PEA      N      W    A L DG    Y G  +P  NL   +  E + +  AE  R T   D   K +PGG FDPLG +    +F  LK KEI+ G L   A +G
Sbjct:   55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL--GNWVKAQEW----AALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVG 204          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.405e-18
Identity = 74/215 (34.42%), Postives = 96/215 (44.65%), Query Frame = 3
Query:  279 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVXGAEYYR----------------ITNGLDFGDKLHPGGP-FDPLGLAXGS-*QFALLKXKEIRMGDLPWFACLGS-FSRLCHSEGQV-RTC*HLSDP 863
            PDR ++ P      S  P +L G +PGD+G+DP GL+  P+     Q  EL+H RWAMLGAAG  IPE   K G    P   W+  G      +T   F            I E+VL+  AE  R                  N L   D  +PGG  FDPLG   GS  +   L+ KEI+ G L   A +G+ F  +    G +     HL+DP
Sbjct:   63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.098e-17
Identity = 73/215 (33.95%), Postives = 96/215 (44.65%), Query Frame = 3
Query:  279 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVXGAEYYR----------------ITNGLDFGDKLHPGGP-FDPLGLAXGS-*QFALLKXKEIRMGDLPWFACLGS-FSRLCHSEGQV-RTC*HLSDP 863
            PDR ++ P      S  PE+L G +PGD+G+DP GL   P+        EL+H+RWAMLGAAG  IPE   K G    P   W+  G      +T   F            + E+VL+  AE  R                  N L   D  +PGG  FDPLG   GS  +   L+ KEI+ G L   A +G+ F  +    G +     HL+DP
Sbjct:   63 PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF------------VIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.612e-16
Identity = 68/182 (37.36%), Postives = 89/182 (48.90%), Query Frame = 3
Query:  336 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVXGAEYYRITN-------------GLD-----FGDKLHPGGP-FDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF 806
            YL G +PGD+G+DP GLS           K+ AY E+I+ R+AMLGAAG I PE   K G      A+ WF+TG +   G T NY+  N  +      + E+ L+  AE+ R  +             GL+      GD  +PGGP F+PLG          LK KEI+ G L   A LG F
Sbjct:   65 YLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.099e-15
Identity = 66/183 (36.07%), Postives = 90/183 (49.18%), Query Frame = 3
Query:  336 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVXGAEYYRITN-------------GLD-----FGDKLHPGGP-FDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF 806
            YL G +PGDYG+DP GLS  P+        ++ AY E+I+ R+AMLGA G I PE   K G      A+ WF+TG +   G T NY+  N  +      + E+ L+  AE+ R  +             GL+      G+  +PGGP F+PLG          LK KE++ G L   A LG F
Sbjct:   67 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 242          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.317e-14
Identity = 54/170 (31.76%), Postives = 79/170 (46.47%), Query Frame = 3
Query:  330 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVXGAEYYRITN-------------GLDFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLG 800
            P+YLTG + GD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F K G    PE  W+       D     YF  +  + ++  ++   V +    +  I N              L  G+  +PGG F+PL  A         K KE+  G L   A LG
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQ----EAKEKELANGRLAMLAFLG 218          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.363e-14
Identity = 54/170 (31.76%), Postives = 79/170 (46.47%), Query Frame = 3
Query:  330 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVXGAEYYRITN-------------GLDFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLG 800
            P YLTG +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G          YF  +  + ++  +++  V +    +  I N              L  G+  +PGG F+PL  A         K KEI  G L   A LG
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFA----PTLEAKEKEIANGRLAMLAFLG 217          
The following BLAST results are available for this feature:
BLAST of EY659723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB121_HORVU2.212e-1837.97Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_SOLLC8.405e-1834.42Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.098e-1733.95Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB13_SOLLC4.612e-1637.36Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA5.099e-1536.07Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB24_ARATH4.317e-1431.76Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA7.363e-1431.76Chlorophyll a-b binding protein P4, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659723 ID=EY659723; Name=EY659723; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCTAACACAATTACGCAGCAGCAGCAACACTCTGAAGATG
GCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGA
GATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTC
CAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAG
AAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGT
TAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGC
CCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAA
GTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGA
CGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCCAGATGGGCCA
TGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGT
GCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCT
TGATGGAAACACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTG
TTTTTGCTGTCATTGCTGAGATTGTTCTTGTANGTGGTGCTGAATATTAT
AGAATCACCAACGGTTTGGATTTTGGAGACAAGCTTCACCCAGGTGGTCC
ATTTGACCCACTGGGATTAGCAAANGGATCCTGACAATTTGCATTGCTAA
AGTNGAAGGAGATCAGAATGGGAGACTTGCCATGGTTCGCATGCCTGGGT
TCTTTCTCCAGGCTATGTCACAGTGAAGGTCAGGTGAGAACTTGCTAACA
TCTCAGTGATCCTTTTGCAACAACTGCTTAACGGATCTCCGGAACTAAAA
AAGCTCCACCTG
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