EY659358

Overview
NameEY659358
Unique NameEY659358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3251 contig Csv1_Contig3251:298..1144. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659358 vs. ExPASy Swiss-Prot
Match: PCCB_RHOER (Propionyl-CoA carboxylase beta chain OS=Rhodococcus erythropolis GN=pccB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.932e-19
Identity = 48/126 (38.10%), Postives = 75/126 (59.52%), Query Frame = 3
Query:   42 QTLVTGFAKIFGQPVGIIGNN----GILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMG 407
            +++VTGF ++ G+ VG+I NN    G L  ESA K A F+ LC    +PLV + ++ G++ G   E  G+ + GAK++ A + A VP+VT++    +G    AM  RA     +F WPN+ ++VMG
Sbjct:  271 RSIVTGFGRMAGRTVGVIANNPLRLGCLNSESAEKAARFVRLCNAFGVPLVVVVDVPGYLPGVSMEWEGVVRRGAKLLHAFAEATVPRVTVVTRKIYGGAYIAMNSRALGATAVFAWPNSEVAVMG 396          
BLAST of EY659358 vs. ExPASy Swiss-Prot
Match: PCCB_BOVIN (Propionyl-CoA carboxylase beta chain, mitochondrial OS=Bos taurus GN=PCCB PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   42 QTLVTGFAKIFGQPVGIIGN-----NGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMG 407
            + ++ GFA++ G+ VGI+GN     +G L   S++KGA F+  C    IPL+   ++ GF+ G+  E  GI + GAK++ A + A VPKVT+I   ++G     M  +    +  + WP A I+VMG
Sbjct:  338 KNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDSFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMG 464          
BLAST of EY659358 vs. ExPASy Swiss-Prot
Match: PCCB_HUMAN (Propionyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=PCCB PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.818e-17
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   42 QTLVTGFAKIFGQPVGIIGN-----NGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMG 407
            + ++ GFA++ G+ VGI+GN     +G L   S++KGA F+  C    IPL+   ++ GF+ G+  E  GI + GAK++ A + A VPKVT+I   ++G     M  +    +  + WP A I+VMG
Sbjct:  338 KNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMG 464          
BLAST of EY659358 vs. ExPASy Swiss-Prot
Match: PCCB_PIG (Propionyl-CoA carboxylase beta chain, mitochondrial OS=Sus scrofa GN=PCCB PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.681e-17
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   42 QTLVTGFAKIFGQPVGIIGN-----NGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMG 407
            + ++ GFA++ G+ VGI+GN     +G L   S++KGA F+  C    IPL+   ++ GF+ G+  E  GI + GAK++ A + A VPK+T+I   ++G     M  +    +  + WP A I+VMG
Sbjct:  338 KNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMG 464          
BLAST of EY659358 vs. ExPASy Swiss-Prot
Match: PCCB_RAT (Propionyl-CoA carboxylase beta chain, mitochondrial OS=Rattus norvegicus GN=Pccb PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.807e-17
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   42 QTLVTGFAKIFGQPVGIIGN-----NGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMG 407
            + +V GFA++ G+ VGI+GN     +G L   S++KGA F+  C    IPL+   ++ GF+ G+  E  GI + GAK++ A + A VPK+T+I   ++G     M  +    +  + WP A I+VMG
Sbjct:  340 KNIVIGFARMNGRTVGIVGNQPNVASGCLDINSSVKGARFVRFCDAFSIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLLGDTNYAWPTAEIAVMG 466          
BLAST of EY659358 vs. ExPASy Swiss-Prot
Match: PCCB_MOUSE (Propionyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus GN=Pccb PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.807e-17
Identity = 46/125 (36.80%), Postives = 72/125 (57.60%), Query Frame = 3
Query:   48 LVTGFAKIFGQPVGIIGN-----NGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMG 407
            +V GFA++ G+ VGI+GN     +G L   S++KGA F+  C    IPL+   ++ GF+ G+  E  GI + GAK++ A + A VPK+T+I   ++G     M  +    +  + WP A I+VMG
Sbjct:  342 IVVGFARMNGRTVGIVGNQPNVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLLGDTNYAWPTAEIAVMG 466          
BLAST of EY659358 vs. ExPASy Swiss-Prot
Match: PCC5_MYCTU (Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium tuberculosis GN=accD5 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.278e-17
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 3
Query:   42 QTLVTGFAKIFGQPVGIIGNN-----GILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGA 413
            Q +V GF +I G+PVGI+ N      G L   ++ K A F+  C    IP+V L ++ GF+ G+  E NGI + GAK++ A   A VPK+T+I   ++G     M  +    +    WP A+I+VMG +
Sbjct:  335 QNIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGAS 463          
BLAST of EY659358 vs. ExPASy Swiss-Prot
Match: PCC6_MYCTU (Probable propionyl-CoA carboxylase beta chain 6 OS=Mycobacterium tuberculosis GN=accD6 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.399e-16
Identity = 44/126 (34.92%), Postives = 72/126 (57.14%), Query Frame = 3
Query:   45 TLVTGFAKIFGQPVGIIGNN-----GILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMG 407
            ++V G  ++ G+ VG++ NN     G L  ESA K A F+ LC    IPLV + ++ G++ G   E  G+ + GAK++ A     VP+VT++   ++G    AM  R+ +   +F WP+A ++VMG
Sbjct:  268 SMVVGLGRLSGRTVGVLANNPLRLGGCLNSESAEKAARFVRLCDAFGIPLVVVVDVPGYLPGVDQEWGGVVRRGAKLLHAFGECTVPRVTLVTRKTYGGAYIAMNSRSLNATKVFAWPDAEVAVMG 393          
BLAST of EY659358 vs. ExPASy Swiss-Prot
Match: PCC6_MYCBO (Probable propionyl-CoA carboxylase beta chain 6 OS=Mycobacterium bovis GN=accD6 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.399e-16
Identity = 44/126 (34.92%), Postives = 72/126 (57.14%), Query Frame = 3
Query:   45 TLVTGFAKIFGQPVGIIGNN-----GILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMG 407
            ++V G  ++ G+ VG++ NN     G L  ESA K A F+ LC    IPLV + ++ G++ G   E  G+ + GAK++ A     VP+VT++   ++G    AM  R+ +   +F WP+A ++VMG
Sbjct:  268 SMVVGLGRLSGRTVGVLANNPLRLGGCLNSESAEKAARFVRLCDAFGIPLVVVVDVPGYLPGVDQEWGGVVRRGAKLLHAFGECTVPRVTLVTRKTYGGAYIAMNSRSLNATKVFAWPDAEVAVMG 393          
BLAST of EY659358 vs. ExPASy Swiss-Prot
Match: PCCB_MYCLE (Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium leprae GN=accD5 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.876e-15
Identity = 43/127 (33.86%), Postives = 69/127 (54.33%), Query Frame = 3
Query:   48 LVTGFAKIFGQPVGIIGNNGILFH-----ESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGA 413
            +V G  +I  +PVGI+ N  I F       ++ K A F+ +C    IP+V L ++ GF+ G+  E +GI + GAK++ A   A VPK+T+I   ++G     M  +    +    WP A+I+VMG +
Sbjct:  338 IVVGLGRIDDRPVGIVANQPIQFAGCLDINASEKAARFVRVCDCFNIPIVMLVDVPGFLPGTEQEYDGIIRRGAKLLFAYGEATVPKITVITRKAYGGAYCVMGSKNMGCDVNLAWPTAQIAVMGAS 464          
The following BLAST results are available for this feature:
BLAST of EY659358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PCCB_RHOER3.932e-1938.10Propionyl-CoA carboxylase beta chain OS=Rhodococcu... [more]
PCCB_BOVIN2.158e-1736.22Propionyl-CoA carboxylase beta chain, mitochondria... [more]
PCCB_HUMAN2.818e-1736.22Propionyl-CoA carboxylase beta chain, mitochondria... [more]
PCCB_PIG3.681e-1735.43Propionyl-CoA carboxylase beta chain, mitochondria... [more]
PCCB_RAT4.807e-1736.22Propionyl-CoA carboxylase beta chain, mitochondria... [more]
PCCB_MOUSE4.807e-1736.80Propionyl-CoA carboxylase beta chain, mitochondria... [more]
PCC5_MYCTU6.278e-1736.43Probable propionyl-CoA carboxylase beta chain 5 OS... [more]
PCC6_MYCTU1.399e-1634.92Probable propionyl-CoA carboxylase beta chain 6 OS... [more]
PCC6_MYCBO1.399e-1634.92Probable propionyl-CoA carboxylase beta chain 6 OS... [more]
PCCB_MYCLE5.876e-1533.86Probable propionyl-CoA carboxylase beta chain 5 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-C07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659358 ID=EY659358; Name=EY659358; organism=Citrus sinensis; type=EST; length=846bp
ATATCAATGAGTTTGTAACTCCATTTGGATTTGTATCTGTGCAGACACTT
GTGACTGGTTTTGCTAAAATCTTTGGTCAACCAGTGGGAATCATTGGAAA
CAATGGAATATTATTCCATGAATCTGCTCTAAAAGGGGCCCATTTCATTG
AACTTTGCACTCAACGGAAAATTCCATTGGTCTTTCTTCAGAATATTACT
GGATTCATGGTTGGCTCAAGATCTGAAGCAAATGGTATAGCAAAGGCTGG
AGCAAAAATGGTGATGGCAGTTTCTTGTGCAAAGGTACCAAAAGTTACAA
TAATTGTTGGAGGTAGTTTTGGTGCTGGAAATTATGCGATGTGTGGGCGT
GCGTATAGTCCCAATTTCATGTTTCTTTGGCCAAATGCCAGAATATCTGT
AATGGGTGGTGCTCAGGTAGCCTCTCCTATCAAAACTTTCTTGCACACAA
CTAATATGTCATCATGCATTTCCTTTGAAGTGAGGGGCATATAGATTTTA
TGATTCATGAATCTGAGTATTTCGATTAATACGTAGTGCTTCTTGCGAAC
AATCTACAATCCTAAGTCCTAACTACAGAAGGAAGATCACATATTGCTTT
CTCCTCTCAAATAAATATCCAATGATTGTTCTTTTTATTACTTCATGAAA
ATTTTGGTTAATTTCCCTGGTNCTTGGACTTCCTCTCTTTGCATTTTCAC
AATGTTTTCCCCATCCTTGAAACCTAATGAACCCGATCGTTACATAGCAA
TTACTTGACTCCTAATTTNATATTTGTTTAAGNATGAATGTTTACTTCCC
TGGCAAACGTAAGCTGCTGGATGCTGTCTCAGTAGAAAGGACAAAA
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