EY659357

Overview
NameEY659357
Unique NameEY659357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6052 contig Csv1_Contig6052:357..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659357 vs. ExPASy Swiss-Prot
Match: FLPA_HALWD (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Haloquadratum walsbyi (strain DSM 16790) GN=flpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.572e-16
Identity = 59/178 (33.15%), Postives = 87/178 (48.88%), Query Frame = 2
Query:  326 GEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDFGHMAKKRTNVIPIIXDARHPAXYRMLVGM-VDCIFSDVAPPDQARILPLMHHIFSKLEVILLFLSRKLHRFTCSAGAVFQSEVKTCNRSF 856
            G  VY E R    + DG    +R+W+  RSKL A     ++   +  G  +LYLGAASGTTVSHV+D  GP    YA+EF+ R  RD   +A  R N+IP++ DAR P  Y  +V   ++ +  DVA   QA +        +    ++L +  +          VF + + T    +
Sbjct:   26 GTTVYGEPR----DTDG----WRLWDAGRSKLGAMFKLDIET-GLTGGESILYLGAASGTTVSHVADFAGPT---YAIEFAPRPVRDLLEVATTRPNLIPLLCDARQPETYAHVVETDIEYLIQDVATRGQATVALRNRQFLAPDGKLILMIKARSEDVLSDPEDVFDTIISTLREGY 191          
BLAST of EY659357 vs. ExPASy Swiss-Prot
Match: FLPA_HALSA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Halobacterium salinarium GN=flpA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.612e-15
Identity = 65/181 (35.91%), Postives = 86/181 (47.51%), Query Frame = 2
Query:  287 GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDFGHMAKKRTNVIPIIXDARHPAXYRMLV-GMVDCIFSDVAPPDQARILPLMHHIFSKLEVILLFLSRKLHRFTCSAGAVFQ 826
            G ED ++      GE  Y E  +     DG    +R W+  RSKL A    G+D   +  G  VLYLGAA+GTTVSHV+D  GP    YAVEF+ R   D   +A  R  + P++ DAR P  Y  +V   VD I  DVA   QA +        +    ++  L  +    T    AVF+
Sbjct:   13 GDEDGVLATR---GEPAYGEPVV-----DG----WRRWDAHRSKLGATFELGLDT-GLSGGDAVLYLGAANGTTVSHVADFAGP---TYAVEFAPRPVTDLLAVADSRERLFPLLKDARAPETYAHVVESGVDAIVQDVATRGQADVALSNRQFLADDGRLVAALKARSEDVTADPAAVFE 177          
BLAST of EY659357 vs. ExPASy Swiss-Prot
Match: FLPA_HALS3 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=flpA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.612e-15
Identity = 65/181 (35.91%), Postives = 86/181 (47.51%), Query Frame = 2
Query:  287 GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDFGHMAKKRTNVIPIIXDARHPAXYRMLV-GMVDCIFSDVAPPDQARILPLMHHIFSKLEVILLFLSRKLHRFTCSAGAVFQ 826
            G ED ++      GE  Y E  +     DG    +R W+  RSKL A    G+D   +  G  VLYLGAA+GTTVSHV+D  GP    YAVEF+ R   D   +A  R  + P++ DAR P  Y  +V   VD I  DVA   QA +        +    ++  L  +    T    AVF+
Sbjct:   13 GDEDGVLATR---GEPAYGEPVV-----DG----WRRWDAHRSKLGATFELGLDT-GLSGGDAVLYLGAANGTTVSHVADFAGP---TYAVEFAPRPVTDLLAVADSRERLFPLLKDARAPETYAHVVESGVDAIVQDVATRGQADVALSNRQFLADDGRLVAALKARSEDVTADPAAVFE 177          
The following BLAST results are available for this feature:
BLAST of EY659357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_HALWD5.572e-1633.15Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_HALSA3.612e-1535.91Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_HALS33.612e-1535.91Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659357 ID=EY659357; Name=EY659357; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGCTTTGTAGCCGGACAGAGCATCAAACATGAGACCTCCAA
GAGGACGCGGTGGTGGCGGTGGGTTCAGGGGAGGCAGAGGTGATGGAGGA
GGAAGAGGAAGAGGTGGCGGCCGAGGTGGTGGAGGTGGAAGAGGTGGTGG
TAGCGCTATGAGAGGCCGAGGTGGCGGTCGTGGCGGTGGCCGAGGTGGAG
GAAGAGGACGCGGTGGTGGAGGAATGAAGGGTGGAAGCAAGGTTGTAGTT
GAGCCTCATAGACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGC
CCTTGTCACTAAGAATCTCGTCGCCGGTGAGGCTGTCTACAATGAGAAGA
GGATCTCCGTCCAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGG
AATCCCTTCCGTTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAA
TATTTGGATTAAACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTTCCG
GCACAACTGTCTCACATGTTTCGGACATTGTTGGCCCTAATGGAGTAGTT
TATGCAGTGGAATTTTCTCATAGAAGTGGTAGAGACTTTGGTCATATGGC
AAAGAAGAGAACCAATGTTATACCCATAATTNGAGATGCTAGACATCCTG
CCNAGTACCGTATGTTGGTCGGTATGGTAGATTGTATATTTTCTGACGTT
GCCCCACCGGATCAGGCGAGGATTTTACCCCTGATGCATCATATTTTCTC
AAAGCTGGAGGTCATTTTGTTATTTCTATCAAGGAAACTGCATAGATTCA
CCTGTTCTGCTGGAGCAGTGTTCCAGAGTGAAGTTAAGACCTGCAACAGG
TCATTCCAACCCTTGAGCA
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