EY659348

Overview
NameEY659348
Unique NameEY659348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12425 contig Csv1_Contig12425:281..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.332e-45
Identity = 81/118 (68.64%), Postives = 98/118 (83.05%), Query Frame = 1
Query:    1 PASGLKNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 354
            P  G K  ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   55 PPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.332e-45
Identity = 81/118 (68.64%), Postives = 98/118 (83.05%), Query Frame = 1
Query:    1 PASGLKNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 354
            P  G K  ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   55 PPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.612e-45
Identity = 78/107 (72.90%), Postives = 96/107 (89.72%), Query Frame = 1
Query:   34 SYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 354
            +YLPPLS EALLK++ YL+RS W+PCLEF  + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.635e-45
Identity = 80/116 (68.97%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 PASGLKNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 348
            P  GLK  ETLSYLP LS E+LLK+I YL+R+GW+PCLEF LE G+V R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  KP
Sbjct:   64 PIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.635e-45
Identity = 80/116 (68.97%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 PASGLKNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 348
            P  GLK  ETLSYLP LS E+LLK+I YL+R+GW+PCLEF LE G+V R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  KP
Sbjct:   64 PIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.924e-44
Identity = 82/118 (69.49%), Postives = 95/118 (80.51%), Query Frame = 1
Query:    1 PASGLKNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 354
            P  G K  ETLSYLPPL+ E L +E+ YL+R+GWIPC+EF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E  K YP  F RIIGFDN RQVQCISFL  KP G
Sbjct:   61 PPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.924e-44
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 1
Query:    1 PASGLKNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 348
            P  G K   TLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP
Sbjct:   55 PPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.924e-44
Identity = 79/116 (68.10%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 PASGLKNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 348
            P  GLK  ETLSYLP LS E+LLK+I YL+R+GW+PCLEF LE G+V R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  +P
Sbjct:   64 PIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.512e-44
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    1 PASGLKNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 348
            P   LK  ETLSYLP LS+E+LLKEI+YLL  GW+PCLEFE+    VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+QV  EV E +  YP + VRIIGFDNKRQVQCISF+A KP
Sbjct:   61 PPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.512e-44
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = 1
Query:    1 PASGLKNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 354
            P  G+K  ETLSYLPPLS E LLK++ YL+RS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV+KEYP  + RIIGFDN RQVQ +SF+A+KPPG
Sbjct:   52 PIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168          
The following BLAST results are available for this feature:
BLAST of EY659348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
RBS5_FLAPR1.332e-4568.64Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS1_FLAPR1.332e-4568.64Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_WHEAT6.612e-4572.90Ribulose bisphosphate carboxylase small chain clon... [more]
RBS3_FRIAG8.635e-4568.97Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FRIAG8.635e-4568.97Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_ZANAE1.924e-4469.49Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_FLAPR1.924e-4468.10Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS1_FRIAG1.924e-4468.10Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS_SILPR2.512e-4470.69Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_AEGTA2.512e-4466.95Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659348 ID=EY659348; Name=EY659348; organism=Citrus sinensis; type=EST; length=598bp
CCCGCGTCCGGCTTGAAGAATCTCGAGACTCTCTCATACCTCCCGCCACT
GTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCT
GGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAG
CACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAA
GCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTG
GGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTT
GACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACC
AGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGT
TGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGT
TCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACT
TTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTATATATATTTTAA
TAATTGAATCCTTTGTTTTCAGTTTCATTAAAAAAAAAAAAAAAAAAA
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