EY659344

Overview
NameEY659344
Unique NameEY659344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659344_ssr583 microsatellite EY659344_ssr583:583..594. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY659344 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.723e-34
Identity = 73/176 (41.48%), Postives = 104/176 (59.09%), Query Frame = 2 
Query:   14 KAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSFNDLVSLWERKIGKTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKGDQTNFQIEPSFGVEASQLYPDVKYTTVDEYLSQFV 541
            K  +RRAVE  GIP+T +  N  A++   +   P    PP D+  I GDGN KA +   +DIG +T+K +DD RTLNK ++ +P  N YS N+L SLWE+KIG+TL R  V  +++L +  E   P +++ S  H  F+ G Q NF I+    VE   LYPD K+ ++D+    FV
Sbjct:  142 KRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLNKNVHFRPSSNCYSINELASLWEKKIGRTLPRFTVTADKLLAHAAENIIPESIVSSFTHDIFINGCQVNFSIDEHSDVEIDTLYPDEKFRSLDDCYEDFV 317
The following BLAST results are available for this feature:
BLAST of EY659344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN1.723e-3441.48Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659344 ID=EY659344; Name=EY659344; organism=Citrus sinensis; type=EST; length=928bp
CCACGCGTCCGCAAAGGCAAAAATCCGCCGAGCCGTTGAGGCTGAAGGGA
TTCCGTATACTTATGTAGCGTCGAATTTCTTTGCTGCTTACTTCCTTCCC
AATTTGTCGCAGCCCGGGGCCACTGCCCCACCTAGGGATAAAGTTGTCAT
CTTAGGCGATGGAAATCCAAAAGCTGTTTATAACAAGGAAGATGATATTG
GAACCTATACTATCAAAGCGGTTGATGATCCCAGAACCTTGAACAAAATC
CTTTACATTAAACCCCCTGGTAATATTTACTCATTCAATGATCTTGTGTC
CTTGTGGGAGAGAAAGATTGGCAAAACCCTCCAAAGGGTGTACGTTCCGG
AGGAGCAAGTCCTAAAGAATATTCAAGAAGCTGCACCTCCAGTCAATGTG
ATATTATCAATTCAGCACTCTGCTTTCGTGAAGGGAGATCAAACCAACTT
CCAGATTGAACCATCGTTTGGAGTTGAAGCCTCGCAGCTCTATCCTGATG
TCAAGTACACTACAGTTGATGAGTATCTCAGTCAGTTTGTGTAAACCCTT
CTCTGTTGAGCTGCAGCTTGCAGGATCTTGGGAAATAAATAAATAATTGG
CTTTTTGCCATCTTTGGTTTCTATATGTAAGCATTATGGTTGTTGGCCTT
ACTTTCGTTTGTTTCTCAATGTGTAGTTTGTAATTAACACCATATTGTGT
CGACTATGTCNGTACACAGTGATCAAATAAAGTAGCCCCATGTGATTAAA
AANAAAAAAAAAAAAAAAANNANNNANNNANNNNNNNNNNNANNNNNNNA
AAAAGGGCGGCGCTCTAAAGAATCAAGTTTACGACGCGGCTTGGGACGCA
TAACTCTTCATAAGGACCCAAATTAATCCCTGGGCGGCGTTTAAACGCGG
GAATGGAAAACCGGGGTACCAACTATCC
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