EY659343
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2) HSP 1 Score: 178.718 bits (452), Expect = 5.038e-66 Identity = 92/161 (57.14%), Postives = 113/161 (70.19%), Query Frame = 2 Query: 113 AAAVPLSFNGSGAATSVPSSSFFGTSLNKVSS-RIPPSKVPSASFKITAEADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 A PL+ NGS A SVP+S F G+SL K ++ R P S S + +T +A EN++ D+W LA D SDDQ DI RGKG VDSLFQAP GTH + SS++Y SQGLR Y++DN + YIAPAFMDKL VHITKNF++LPNIK+ LIL +W GKGQG Sbjct: 11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQG 168 HSP 2 Score: 58.151 bits (139), Expect = 5.038e-66 Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 1 Query: 592 KSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687 KSFQCELVFAK+GINPIMMSAG+ S NAGEP Sbjct: 169 KSFQCELVFAKLGINPIMMSAGELESGNAGEP 200 HSP 3 Score: 57.7658 bits (138), Expect = 5.038e-66 Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 LIRQRYREA+D+I KGKMC L INDL+ GAG M G Y Sbjct: 203 LIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQY 241
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 6.799e-66 Identity = 109/160 (68.12%), Postives = 122/160 (76.25%), Query Frame = 2 Query: 125 PLSFNGSGAATSVPSSSFFGTSLNKVSSR-IPPSKVPSASFKITAE---ADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 PLS N S A TSVPS++FFG +L KV + + KV + S +I AE D KQT DRWKGL D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKL VHITKNF+ LPNIKV LIL IW GKGQG Sbjct: 15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQG 174 HSP 2 Score: 60.077 bits (144), Expect = 6.799e-66 Identity = 33/65 (50.77%), Postives = 37/65 (56.92%), Query Frame = 3 Query: 615 FRQDGHQPNYDECRRXVKCQCWRTA*LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 FR+ G P A LIRQRYREA++II+KG MC L INDLDAGAG M G Y Sbjct: 183 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQY 247
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 2.563e-65 Identity = 108/164 (65.85%), Postives = 124/164 (75.61%), Query Frame = 2 Query: 113 AAAVPLSFNGSGAATSVPSSSFFGTSLNKVSSR-IPPSKVPSASFKITAE---ADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 A PLS N S A TSVPS++FFG +L KV + + KV + S +I AE AD KQT DRWKGL D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKL VHITKNF+ LPNIKV LIL +W GKGQG Sbjct: 11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQG 174 HSP 2 Score: 58.5362 bits (140), Expect = 2.563e-65 Identity = 32/65 (49.23%), Postives = 37/65 (56.92%), Query Frame = 3 Query: 615 FRQDGHQPNYDECRRXVKCQCWRTA*LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 FR+ G P A LIRQRYREA++II+KG +C L INDLDAGAG M G Y Sbjct: 183 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQY 247
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 1.373e-63 Identity = 102/161 (63.35%), Postives = 126/161 (78.26%), Query Frame = 2 Query: 113 AAAVPLSFNGSGAATSVPSSSFFGTSLNKVSSR-IPPSKVPSASFKITAEADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 A+ PLS N S A TSVPS++FFG SL KV ++ + KV + + ++ A+ E +TK+DRWKGL + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKL VHITKNF++LPNIKV LIL +W GKGQG Sbjct: 11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQ--EVDETKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQG 169 HSP 2 Score: 60.077 bits (144), Expect = 1.373e-63 Identity = 33/65 (50.77%), Postives = 37/65 (56.92%), Query Frame = 3 Query: 615 FRQDGHQPNYDECRRXVKCQCWRTA*LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 FR+ G P A LIRQRYREA++II+KG MC L INDLDAGAG M G Y Sbjct: 178 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQY 242
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3) HSP 1 Score: 192.2 bits (487), Expect = 6.690e-60 Identity = 105/174 (60.34%), Postives = 121/174 (69.54%), Query Frame = 2 Query: 146 GAATSVPS-SSFFGTSLNK--VSSRIP---PSKVPSASFKITA--EADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQGNHSNVSLFSPRWASTQL 643 GA S P+ SSF G LNK VS+ + S ++ FK A E DE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN +DG YIA FMDKL VH++KNFM+LPNIKV LIL IW GKGQG L + T + Sbjct: 10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPI 183 HSP 2 Score: 60.8474 bits (146), Expect = 6.690e-60 Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 3 Query: 693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 LIRQRYREASD+IKKGKM L INDLDAGAG M G Y Sbjct: 201 LIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQY 239
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 7.429e-45 Identity = 65/132 (49.24%), Postives = 84/132 (63.64%), Query Frame = 2 Query: 206 SRIPPSKVPSASFKITAEADENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 +R+ V A ++ A + + + RW+ + D SDDQQDITRG+ VD LFQ G G TH AV+SS +Y+SQ ++N N DG YI+PAF+DK+ +HI KNFM LP IKV LIL IW GKGQG Sbjct: 18 ARVATRSVRRAQLQVVAPS----RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQG 143 HSP 2 Score: 58.9214 bits (141), Expect = 7.429e-45 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 LIR RYREASDIIKKG+MC L INDLDAGAG M Y Sbjct: 178 LIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQY 216 HSP 3 Score: 45.4394 bits (106), Expect = 7.429e-45 Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1 Query: 592 KSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687 K+FQC L + K+GI PI+MSAG+ S NAGEP Sbjct: 144 KTFQCALAYKKLGIAPIVMSAGELESGNAGEP 175
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 2.402e-21 Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 2 Query: 476 YIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 YIAP F+DKL VHITKNF++LP ++V LIL I KG+G Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEG 42 HSP 2 Score: 49.6766 bits (117), Expect = 2.402e-21 Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 3 Query: 693 LIRQRYREASDIIK-KGKMCLLLINDLDAGAGPMEGPPHY 809 LIR RYRE +++IK +GKMC+L+INDLDAGAG + Y Sbjct: 77 LIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQY 116 HSP 3 Score: 39.2762 bits (90), Expect = 2.402e-21 Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 1 Query: 577 RQRTRKSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687 R+ K+FQCEL F KMG+ ++S G+ S +AG+P Sbjct: 38 RKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDP 74
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 3.114e-21 Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 2 Query: 476 YIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 YIAP F+DKL VHITKNF+++P ++V LIL I KG+G Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEG 42 HSP 2 Score: 49.6766 bits (117), Expect = 3.114e-21 Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 3 Query: 693 LIRQRYREASDIIK-KGKMCLLLINDLDAGAGPMEGPPHY 809 LIR RYRE +++IK +GKMC+L+INDLDAGAG + Y Sbjct: 77 LIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQY 116 HSP 3 Score: 39.6614 bits (91), Expect = 3.114e-21 Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 1 Query: 577 RQRTRKSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687 R+ K+FQCEL F KMGI ++S G+ S +AG+P Sbjct: 38 RKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDP 74
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.501e-14 Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 2 Query: 299 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLR 442 GLAYD SDDQQDITRG VDSLFQAPM GTHYAVMSSY+YISQGLR Sbjct: 1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR 46 The following BLAST results are available for this feature:
BLAST of EY659343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659343 ID=EY659343; Name=EY659343; organism=Citrus sinensis; type=EST; length=923bpback to top |