EY659343

Overview
NameEY659343
Unique NameEY659343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 5.038e-66
Identity = 92/161 (57.14%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  113 AAAVPLSFNGSGAATSVPSSSFFGTSLNKVSS-RIPPSKVPSASFKITAEADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592
            A   PL+ NGS A  SVP+S F G+SL K ++ R P S   S +  +T +A EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKL VHITKNF++LPNIK+ LIL +W GKGQG
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQG 168          

HSP 2 Score: 58.151 bits (139), Expect = 5.038e-66
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 1
Query:  592 KSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687
            KSFQCELVFAK+GINPIMMSAG+  S NAGEP
Sbjct:  169 KSFQCELVFAKLGINPIMMSAGELESGNAGEP 200          

HSP 3 Score: 57.7658 bits (138), Expect = 5.038e-66
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 3
Query:  693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809
            LIRQRYREA+D+I KGKMC L INDL+ GAG M G   Y
Sbjct:  203 LIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQY 241          
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 6.799e-66
Identity = 109/160 (68.12%), Postives = 122/160 (76.25%), Query Frame = 2
Query:  125 PLSFNGSGAATSVPSSSFFGTSLNKVSSR-IPPSKVPSASFKITAE---ADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592
            PLS N S A TSVPS++FFG +L KV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKL VHITKNF+ LPNIKV LIL IW GKGQG
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQG 174          

HSP 2 Score: 60.077 bits (144), Expect = 6.799e-66
Identity = 33/65 (50.77%), Postives = 37/65 (56.92%), Query Frame = 3
Query:  615 FRQDGHQPNYDECRRXVKCQCWRTA*LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809
            FR+ G  P                A LIRQRYREA++II+KG MC L INDLDAGAG M G   Y
Sbjct:  183 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQY 247          
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.563e-65
Identity = 108/164 (65.85%), Postives = 124/164 (75.61%), Query Frame = 2
Query:  113 AAAVPLSFNGSGAATSVPSSSFFGTSLNKVSSR-IPPSKVPSASFKITAE---ADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592
            A   PLS N S A TSVPS++FFG +L KV  + +   KV + S +I AE   AD  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKL VHITKNF+ LPNIKV LIL +W GKGQG
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQG 174          

HSP 2 Score: 58.5362 bits (140), Expect = 2.563e-65
Identity = 32/65 (49.23%), Postives = 37/65 (56.92%), Query Frame = 3
Query:  615 FRQDGHQPNYDECRRXVKCQCWRTA*LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809
            FR+ G  P                A LIRQRYREA++II+KG +C L INDLDAGAG M G   Y
Sbjct:  183 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQY 247          
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.373e-63
Identity = 102/161 (63.35%), Postives = 126/161 (78.26%), Query Frame = 2
Query:  113 AAAVPLSFNGSGAATSVPSSSFFGTSLNKVSSR-IPPSKVPSASFKITAEADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592
            A+  PLS N S A TSVPS++FFG SL KV ++ +   KV + + ++ A+  E  +TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKL VHITKNF++LPNIKV LIL +W GKGQG
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQ--EVDETKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQG 169          

HSP 2 Score: 60.077 bits (144), Expect = 1.373e-63
Identity = 33/65 (50.77%), Postives = 37/65 (56.92%), Query Frame = 3
Query:  615 FRQDGHQPNYDECRRXVKCQCWRTA*LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809
            FR+ G  P                A LIRQRYREA++II+KG MC L INDLDAGAG M G   Y
Sbjct:  178 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQY 242          
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 6.690e-60
Identity = 105/174 (60.34%), Postives = 121/174 (69.54%), Query Frame = 2
Query:  146 GAATSVPS-SSFFGTSLNK--VSSRIP---PSKVPSASFKITA--EADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQGNHSNVSLFSPRWASTQL 643
            GA  S P+ SSF G  LNK  VS+ +     S   ++ FK  A  E DE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN +DG YIA  FMDKL VH++KNFM+LPNIKV LIL IW GKGQG      L   +   T +
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPI 183          

HSP 2 Score: 60.8474 bits (146), Expect = 6.690e-60
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 3
Query:  693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809
            LIRQRYREASD+IKKGKM  L INDLDAGAG M G   Y
Sbjct:  201 LIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQY 239          
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.429e-45
Identity = 65/132 (49.24%), Postives = 84/132 (63.64%), Query Frame = 2
Query:  206 SRIPPSKVPSASFKITAEADENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592
            +R+    V  A  ++ A +    + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKV LIL IW GKGQG
Sbjct:   18 ARVATRSVRRAQLQVVAPS----RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQG 143          

HSP 2 Score: 58.9214 bits (141), Expect = 7.429e-45
Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3
Query:  693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809
            LIR RYREASDIIKKG+MC L INDLDAGAG M     Y
Sbjct:  178 LIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQY 216          

HSP 3 Score: 45.4394 bits (106), Expect = 7.429e-45
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1
Query:  592 KSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687
            K+FQC L + K+GI PI+MSAG+  S NAGEP
Sbjct:  144 KTFQCALAYKKLGIAPIVMSAGELESGNAGEP 175          
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.402e-21
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 2
Query:  476 YIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592
            YIAP F+DKL VHITKNF++LP ++V LIL I   KG+G
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEG 42          

HSP 2 Score: 49.6766 bits (117), Expect = 2.402e-21
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 3
Query:  693 LIRQRYREASDIIK-KGKMCLLLINDLDAGAGPMEGPPHY 809
            LIR RYRE +++IK +GKMC+L+INDLDAGAG  +    Y
Sbjct:   77 LIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQY 116          

HSP 3 Score: 39.2762 bits (90), Expect = 2.402e-21
Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 1
Query:  577 RQRTRKSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687
            R+   K+FQCEL F KMG+   ++S G+  S +AG+P
Sbjct:   38 RKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDP 74          
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 3.114e-21
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 2
Query:  476 YIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592
            YIAP F+DKL VHITKNF+++P ++V LIL I   KG+G
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEG 42          

HSP 2 Score: 49.6766 bits (117), Expect = 3.114e-21
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 3
Query:  693 LIRQRYREASDIIK-KGKMCLLLINDLDAGAGPMEGPPHY 809
            LIR RYRE +++IK +GKMC+L+INDLDAGAG  +    Y
Sbjct:   77 LIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQY 116          

HSP 3 Score: 39.6614 bits (91), Expect = 3.114e-21
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 1
Query:  577 RQRTRKSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687
            R+   K+FQCEL F KMGI   ++S G+  S +AG+P
Sbjct:   38 RKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDP 74          
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.501e-14
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 2
Query:  299 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLR 442
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR 46          
The following BLAST results are available for this feature:
BLAST of EY659343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_SPIOL5.038e-6657.14Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC6.799e-6668.13Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.563e-6565.85Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.373e-6363.35Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE6.690e-6060.34Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE7.429e-4549.24Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC2.402e-2164.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP3.114e-2161.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY1.501e-1485.42Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659343 ID=EY659343; Name=EY659343; organism=Citrus sinensis; type=EST; length=923bp
CCACGCGTCCGCAACACGCACTCACCGCATTGCTTCACTTTCCTTTGCCT
GCATTACAGCGTGACCCTTTAGCTACTTCAATCACTGCCGTCCAATTCTC
GCTAGCCTAATGGCTGCTGCTGTACCGCTGAGCTTCAATGGCTCTGGTGC
TGCAACCTCTGTCCCAAGCTCATCTTTCTTTGGCACCAGCTTGAACAAGG
TAAGCTCAAGGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATT
ACTGCTGAAGCCGATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGG
CCTTGCCTACGACGAATCTGATGACCAACAAGACATCACCAGAGGAAAAG
GTGCTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTAT
GCTGTCATGAGTTCTTATGACTACATCAGCCAAGGTCTCCGCACATACAA
CTTGGACAACACGATCGACGGTCTCTACATTGCCCCTGCTTTCATGGACA
AGCTTGGTGTTCACATCACCAAGAACTTCATGTCCCTGCCCAACATCAAG
GTTCATCTCATCTTGAGTATTTGGTGAGGCAAAGGACAAGGAAATCATTC
CAATGTGAGCTTGTTTTCGCCAAGATGGGCATCAACCCAATTATGATGAG
TGCCGGAGATTNGTGAAGTGCCAATGCTGGAGAACCGCCTAATTGATCAG
GCAAAGGTACCGTGAGGCATCTGACATTATCAAGAAAGGAAAAATGTGCC
TGCTCCTGATCAATGATCTCGACGCCGGAGCTGGTCCTATGGAGGGGCCC
CCCCATTACCACTTTACCACCAATGGGTTACCCCCACCCCTGACATTGCT
GATAACCCACTTGGGCCCACTCCCTGGATGACAACCAGGGGAAAACCCCC
GGGCCCAACATAGACCGGAACCA
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