EY659272

Overview
NameEY659272
Unique NameEY659272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659272_ssr76 microsatellite EY659272_ssr76:76..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ1_MOUSE (ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.168e-18
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 1
Query:  433 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEV----AETIRLIQVGAIKVLFVSPER 759
            +L+ V+    FR  QLE I + + +K   LV+PTG GKSLCYQ+PA+   G TLV+CPL++LM DQL  L  + I    L++S   E V    AE +   +   +K+++V+PE+
Sbjct:   82 VLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVN--KNSQLKLIYVTPEK 193          

HSP 2 Score: 30.8018 bits (68), Expect = 4.168e-18
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 2
Query:  812 VGGDEAHCVSEWAHNFPPLY 871
            V  DE HC S+W H+F P Y
Sbjct:  216 VAVDEVHCCSQWGHDFRPDY 235          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ1_HUMAN (ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 5.420e-18
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 1
Query:  433 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEV----AETIRLIQVGAIKVLFVSPER 759
            +L+ V+  + FR  QLE I + +  K   LV+PTG GKSLCYQ+PA+   G TLV+CPL++LM DQL  L  + I    L++S   E V    AE +   +   +K+++V+PE+
Sbjct:   82 ILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVN--KNSELKLIYVTPEK 193          

HSP 2 Score: 30.4166 bits (67), Expect = 5.420e-18
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  821 DEAHCVSEWAHNFPPLY 871
            DE HC S+W H+F P Y
Sbjct:  219 DEVHCCSQWGHDFRPDY 235          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: SGS1_YEAST (ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae GN=SGS1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.017e-18
Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  412 SNENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLVALMIDQLRH-LPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 756
            S+E L RL   V+    FR  QLEA+   L  K   +++PTG GKSLCYQ+PA++      G T+V+ PL++LM DQ+ H L   I     SS    E+  +T  L   G + ++++SPE
Sbjct:  663 SDEVLYRLHE-VFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLVYISPE 781          

HSP 2 Score: 33.113 bits (74), Expect = 9.017e-18
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 2
Query:  821 DEAHCVSEWAHNFPPLY 871
            DEAHCVS W H+F P Y
Sbjct:  808 DEAHCVSNWGHDFRPDY 824          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: BLM_DROME (Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.523e-17
Identity = 53/177 (29.94%), Postives = 87/177 (49.15%), Query Frame = 1
Query:  253 SKKKLNKNETESKGAEDEYGLIIENLEQNQKNRRAAGELE--LVEDAVRAVKDEASNENLGRL---LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI--QVGAIKVLFVSPER 759
            S+   NK+   S G      ++         +++ +G     +  D +    D    E+  RL   L   +G  SFR  QL+ I   L      +++PTG GKSLCYQ+PA++  G+T+V+ PL +L+ DQ+  L  + I    LS  Q+  +V    R +  Q   +K+L+V+PE+
Sbjct:  663 SQAAANKSRVSSAGPSTSKSVVPTKQTSALHSQKLSGNFHANVHNDGITGEFDGQKFEHSTRLMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEK 839          

HSP 2 Score: 33.8834 bits (76), Expect = 1.523e-17
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  821 DEAHCVSEWAHNFPPLY 871
            DEAHCVS+W H+F P Y
Sbjct:  865 DEAHCVSQWGHDFRPDY 881          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECS_BACSU (Probable ATP-dependent DNA helicase recS OS=Bacillus subtilis GN=recS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.557e-17
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  424 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 756
            L + L   +G+ SF+ GQ + I+ +L  K T+ +LPTG GKSLCYQ+P  +L G+ L+V PL++LM DQ++ L         + +           L  +   K L++SPE
Sbjct:    4 LQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARGEKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPE 114          

HSP 2 Score: 36.1946 bits (82), Expect = 1.557e-17
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 2
Query:  803 ISLVGGDEAHCVSEWAHNFPPLY 871
            ISL   DEAHC+SEW H+F P Y
Sbjct:  130 ISLFVIDEAHCISEWGHDFRPDY 152          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: BLM_XENLA (Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.578e-17
Identity = 41/118 (34.75%), Postives = 70/118 (59.32%), Query Frame = 1
Query:  415 NENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI--QVGAIKVLFVSPER 759
            ++ + ++    +G   FR  QLEAI   L  +   +++PTG GKSLCYQ+P  I PG+T+V+ PL +L++DQ++ L  + I   +L+  +   E A     +  +   IK+L+V+PE+
Sbjct:  604 SKEMMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEK 721          

HSP 2 Score: 34.2686 bits (77), Expect = 2.578e-17
Identity = 14/30 (46.67%), Postives = 20/30 (66.67%), Query Frame = 2
Query:  782 NIYCYFIISLVGGDEAHCVSEWAHNFPPLY 871
            N+Y   +++    DEAHCVS+W H+F P Y
Sbjct:  734 NLYERQLLARFVIDEAHCVSQWGHDFRPDY 763          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ1_PONAB (ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.402e-17
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  433 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEV----AETIRLIQVGAIKVLFVSPER 759
            +L+ V+    FR  QLE I + +  K   LV+PTG GK LCYQ+PA+   G TLV+CPL++LM DQL  L  + I    L++S   E V    AE +   +   +K+++V+PE+
Sbjct:   82 VLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKGLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVN--KNSELKLIYVTPEK 193          

HSP 2 Score: 30.4166 bits (67), Expect = 3.402e-17
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  821 DEAHCVSEWAHNFPPLY 871
            DE HC S+W H+F P Y
Sbjct:  219 DEVHCCSQWGHDFRPDY 235          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: HUS2_SCHPO (ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe GN=rqh1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.664e-17
Identity = 51/122 (41.80%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  412 SNENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVG--AIKVLFVSPE 756
            S E LG  L+  +    FR  QLEAI   L  K   +++PTG GKSLCYQ+PA+I      G+TLV+ PL++LM DQL HL  + I    LS  Q  +E  + I  +      +K+L+V+PE
Sbjct:  504 SKEVLG-CLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVTPE 624          

HSP 2 Score: 33.4982 bits (75), Expect = 5.664e-17
Identity = 13/34 (38.24%), Postives = 22/34 (64.71%), Query Frame = 2
Query:  770 QIFCNIYCYFIISLVGGDEAHCVSEWAHNFPPLY 871
            ++  ++Y   +++ +  DEAHCVS W H+F P Y
Sbjct:  634 RVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDY 667          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: BLM_MOUSE (Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.557e-17
Identity = 41/107 (38.32%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  448 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI--QVGAIKVLFVSPER 759
            +G  +FR  QLEAI   L  +   +++PTG GKSLCYQ+PA + PG+T+V+ PL +L++DQ++ L    I   +L+  +   E A     +  +   IK+L+V+PE+
Sbjct:  671 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 777          

HSP 2 Score: 31.187 bits (69), Expect = 9.557e-17
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  782 NIYCYFIISLVGGDEAHCVSEWAHNF 859
            N+Y   +++    DEAHCVS+W H+F
Sbjct:  790 NLYERKLLARFVIDEAHCVSQWGHDF 815          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: BLM_CHICK (Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.598e-17
Identity = 46/126 (36.51%), Postives = 75/126 (59.52%), Query Frame = 1
Query:  391 RAVKDEASNENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI--QVGAIKVLFVSPER 759
            R +K   S E L ++    +G  SFR  QLEAI   L  +   +++PTG GKSLCYQ+PA +  G+T+V+ PL +L+IDQ++ L  + I   +L+      + ++T   +  +   IK+L+V+PE+
Sbjct:  375 RGMKFSHSEEML-KIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEK 499          

HSP 2 Score: 31.5722 bits (70), Expect = 9.598e-17
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  782 NIYCYFIISLVGGDEAHCVSEWAHNF 859
            N+Y   +++    DEAHCVS+W H+F
Sbjct:  512 NLYDRKLLARFVIDEAHCVSQWGHDF 537          
The following BLAST results are available for this feature:
BLAST of EY659272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RECQ1_MOUSE4.168e-1841.23ATP-dependent DNA helicase Q1 OS=Mus musculus GN=R... [more]
RECQ1_HUMAN5.420e-1841.23ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=R... [more]
SGS1_YEAST9.017e-1839.17ATP-dependent helicase SGS1 OS=Saccharomyces cerev... [more]
BLM_DROME1.523e-1729.94Bloom syndrome protein homolog OS=Drosophila melan... [more]
RECS_BACSU1.557e-1736.04Probable ATP-dependent DNA helicase recS OS=Bacill... [more]
BLM_XENLA2.578e-1734.75Bloom syndrome protein homolog OS=Xenopus laevis G... [more]
RECQ1_PONAB3.402e-1740.35ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=R... [more]
HUS2_SCHPO5.664e-1741.80ATP-dependent DNA helicase hus2/rqh1 OS=Schizosacc... [more]
BLM_MOUSE9.557e-1738.32Bloom syndrome protein homolog OS=Mus musculus GN=... [more]
BLM_CHICK9.598e-1736.51Bloom syndrome protein homolog (Fragment) OS=Gallu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659272 ID=EY659272; Name=EY659272; organism=Citrus sinensis; type=EST; length=924bp
CAGGTTTCCGGTCCGNATTCCCGCCTCGACCCAGCGTCCGCCAAGTATTA
ACGGAATCAAAATGATGCATCCGCTAAGAAGAAGAAGCAAATTAATTTAG
TAAGCGTTGATGTTCCCTTGCCGCCGGCAAAATTGCGAAAATGTAACGGT
GAAGGTAACTTCGTGAGGTTGAATCTGAATAACAATAAGCGTAAATTCGC
TAACAAAGGTAAAAGAAATAAGTCATTTAGAGGTAAACTCTCTTATAGGA
GAAGCAAGAAGAAGTTGAATAAAAATGAAACAGAGAGTAAAGGAGCTGAA
GATGAATACGGTTTGATTATTGAAAATCTTGAGCAGAATCAGAAGAATAG
AAGAGCTGCTGGTGAGCTTGAGTTGGTGGAAGACGCGGTGAGAGCCGTCA
AAGACGAGGCTTCGAATGAGAATCTAGGGAGGTTGTTGAGGCTTGTGTAT
GGTTATGATTCGTTTCGCGATGGACAGCTAGAGGCCATAAAGATGGTCCT
TGATAAGAAGTCAACGATGCTGGTTTTGCCAACTGGTGCAGGGAAATCGT
TGTGTTATCAGATACCGGCAATGATTTTGCCAGGGCTGACTCTGGTTGTT
TGTCCCTTAGTGGCTTTAATGATTGATCAATTGAGGCATCTGCCTCCAGT
GATTCATGGCGGCTTTTTGAGTAGTAGTCAGAGACCTGAAGAGGTTGCTG
AGACGATAAGGCTGATTCAAGTAGGGGCAATAAAGGTGCTTTTTGTTTCT
CCAGAAAGATTTTTAAATGCAGATTTTTTGTAATATTTACTGCTACTTCA
TTATATCACTTGTTGGGGGGGATGAAGCTCACTGTGTATCTGAGTGGGCA
CATAATTTTCCGCCCTTATACATGAGGCTTAGAGCGTCCCTACTTCGAGC
AAGGCTCAAATGTGAGTGCATTCT
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