EY659272

Overview
NameEY659272
Unique NameEY659272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659272_ssr76 microsatellite EY659272_ssr76:76..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: BLM_CAEEL (Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.626e-17
Identity = 45/119 (37.82%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  415 NENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVG----AIKVLFVSPER 759
            N+ L   L+  +G++ FR  Q + I   L    T +++PTGAGKSLCYQ+PA+ILPG+T+VV PL +L+ DQ   +  +  G    ++       E I   ++G    +IK+L+V+PE+
Sbjct:  232 NKELYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVSPLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKI-YAELGSGNPSIKLLYVTPEK 349          

HSP 2 Score: 33.8834 bits (76), Expect = 9.626e-17
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  821 DEAHCVSEWAHNFPPLY 871
            DEAHCVS+W H+F P Y
Sbjct:  375 DEAHCVSQWGHDFRPDY 391          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: BLM_HUMAN (Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-16
Identity = 40/107 (37.38%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  448 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI--QVGAIKVLFVSPER 759
            +G  +FR  QLEAI   L  +   +++PTG GKSLCYQ+PA + PG+T+V+ PL +L++DQ++ L  + I   +L+  +   E       +  +   IK+L+V+PE+
Sbjct:  663 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769          

HSP 2 Score: 31.187 bits (69), Expect = 2.098e-16
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  782 NIYCYFIISLVGGDEAHCVSEWAHNF 859
            N+Y   +++    DEAHCVS+W H+F
Sbjct:  782 NLYERKLLARFVIDEAHCVSQWGHDF 807          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: WRN_HUMAN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.543e-16
Identity = 51/161 (31.68%), Postives = 86/161 (53.42%), Query Frame = 1
Query:  280 TESKGAEDEYGLIIENLEQNQKNRRAAGELELVEDAVRAVKDEASNENLGRLLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 756
            T SK  + E  L +   E+ + +   A E E  ED  +     A NE     L++ +G+ SF+  Q + I  VL+ ++  + V+ TG GKSLC+Q P + +  + LV+ PL++LM DQ+  L    I   FL S+Q    + +    I++G  ++++V+PE
Sbjct:  490 THSKCLKMERNLGLPTKEEEEDDENEANEGE--EDDDKDFLWPAPNEEQVTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLISLMEDQVLQLKMSNIPACFLGSAQSENVLTD----IKLGKYRIVYVTPE 644          

HSP 2 Score: 35.039 bits (79), Expect = 3.543e-16
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  803 ISLVGGDEAHCVSEWAHNF 859
            I+L+  DEAHC+SEW H+F
Sbjct:  662 ITLIAVDEAHCISEWGHDF 680          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ1_CAEEL (Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans GN=tag-51 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.781e-15
Identity = 52/183 (28.42%), Postives = 91/183 (49.73%), Query Frame = 1
Query:  265 LNKNETESKGAEDEYGLIIENLEQ-NQKNRRAAGELELVEDAVRAVKDEASN--------------ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI--QVGAIKVLFVSPER 759
            L+K  TE    + E G I + + Q  +K      + + +E  +    +E S+              +   ++L+  +  + FR  Q  AI  V+ K+  +++L TG GKSLCYQ+PA++  GL LVV PL++L+ DQ+  L  + I    L+++   EE       I  +    ++L+V+PE+
Sbjct:  408 LSKLSTELADLDGEIGQIDQQISQLRRKKSELTQKRQAIERKIELKTNEDSDVVTDRWDRDGFPWSDEATKILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLANGLALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYVTPEK 590          

HSP 2 Score: 29.261 bits (64), Expect = 3.781e-15
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  803 ISLVGGDEAHCVSEWAHNF 859
            + L+  DE HC S+W H+F
Sbjct:  610 LKLIAIDEVHCCSQWGHDF 628          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: WRN_XENLA (Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.317e-15
Identity = 36/109 (33.03%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  436 LRLVYGYDSFRDGQLEAIKMVL-DKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 756
            L+  +G+ SF+  Q + +  VL +++  ++V+ TG GKSLCYQ   +   G+ +V+CPL++LM DQ+  L    I   FL S+Q    + +    ++ G ++V++++PE
Sbjct:  481 LKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICPLISLMEDQVLQLEMSNISSCFLGSAQSKNVLQD----VKDGKMRVIYMTPE 585          

HSP 2 Score: 35.8094 bits (81), Expect = 6.317e-15
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2
Query:  803 ISLVGGDEAHCVSEWAHNFPPLY 871
            I+L+  DEAHC+SEW H+F   Y
Sbjct:  603 ITLIAIDEAHCISEWGHDFRSAY 625          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: YR290_MIMIV (Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R290 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.416e-14
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  418 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 756
            + L +LL++VYGYD+FR  Q E I  V++ +    +L T AGKSLC+QIPA+ L    +++ PL++LM DQ R +   +       +   E  A+  + I     K ++VSPE
Sbjct:   15 KKLKKLLKMVYGYDNFRPRQYEIINKVINGEDVCAILMTSAGKSLCFQIPALYLDKPAIIISPLISLMEDQ-RLILEKLGISSCCYNSNVENKAQMRKDIMQFKYKFIYVSPE 126          

HSP 2 Score: 27.7202 bits (60), Expect = 1.416e-14
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  803 ISLVGGDEAHCVSEWAHNFPPLY 871
            ISL+  DEAHC+S +  +F   Y
Sbjct:  144 ISLIAIDEAHCISAYGFDFRTAY 166          
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: WRN_MOUSE (Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 1.531e-12
Identity = 33/108 (30.56%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  436 LRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 756
            L+  +G+ SF+  Q + I  VL+ ++  ++V+ TG GKSLC+Q P +    + +V+ PL++LM DQ+  L        L  S + + +   ++L   G  +V++++PE
Sbjct:  504 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLISLMEDQVLQLELSNVPACLLGSAQSKNILGDVKL---GKYRVIYITPE 608          

HSP 2 Score: 35.039 bits (79), Expect = 1.531e-12
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  803 ISLVGGDEAHCVSEWAHNF 859
            I+L+  DEAHC+SEW H+F
Sbjct:  626 ITLIAVDEAHCISEWGHDF 644          
The following BLAST results are available for this feature:
BLAST of EY659272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
BLM_CAEEL9.626e-1737.82Bloom syndrome protein homolog OS=Caenorhabditis e... [more]
BLM_HUMAN2.098e-1637.38Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1... [more]
WRN_HUMAN3.543e-1631.68Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
RECQ1_CAEEL3.781e-1528.42Putative ATP-dependent DNA helicase Q1 OS=Caenorha... [more]
WRN_XENLA6.317e-1533.03Werner syndrome ATP-dependent helicase homolog OS=... [more]
YR290_MIMIV1.416e-1437.17Putative ATP-dependent RNA helicase R290 OS=Acanth... [more]
WRN_MOUSE1.531e-1230.56Werner syndrome ATP-dependent helicase homolog OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659272 ID=EY659272; Name=EY659272; organism=Citrus sinensis; type=EST; length=924bp
CAGGTTTCCGGTCCGNATTCCCGCCTCGACCCAGCGTCCGCCAAGTATTA
ACGGAATCAAAATGATGCATCCGCTAAGAAGAAGAAGCAAATTAATTTAG
TAAGCGTTGATGTTCCCTTGCCGCCGGCAAAATTGCGAAAATGTAACGGT
GAAGGTAACTTCGTGAGGTTGAATCTGAATAACAATAAGCGTAAATTCGC
TAACAAAGGTAAAAGAAATAAGTCATTTAGAGGTAAACTCTCTTATAGGA
GAAGCAAGAAGAAGTTGAATAAAAATGAAACAGAGAGTAAAGGAGCTGAA
GATGAATACGGTTTGATTATTGAAAATCTTGAGCAGAATCAGAAGAATAG
AAGAGCTGCTGGTGAGCTTGAGTTGGTGGAAGACGCGGTGAGAGCCGTCA
AAGACGAGGCTTCGAATGAGAATCTAGGGAGGTTGTTGAGGCTTGTGTAT
GGTTATGATTCGTTTCGCGATGGACAGCTAGAGGCCATAAAGATGGTCCT
TGATAAGAAGTCAACGATGCTGGTTTTGCCAACTGGTGCAGGGAAATCGT
TGTGTTATCAGATACCGGCAATGATTTTGCCAGGGCTGACTCTGGTTGTT
TGTCCCTTAGTGGCTTTAATGATTGATCAATTGAGGCATCTGCCTCCAGT
GATTCATGGCGGCTTTTTGAGTAGTAGTCAGAGACCTGAAGAGGTTGCTG
AGACGATAAGGCTGATTCAAGTAGGGGCAATAAAGGTGCTTTTTGTTTCT
CCAGAAAGATTTTTAAATGCAGATTTTTTGTAATATTTACTGCTACTTCA
TTATATCACTTGTTGGGGGGGATGAAGCTCACTGTGTATCTGAGTGGGCA
CATAATTTTCCGCCCTTATACATGAGGCTTAGAGCGTCCCTACTTCGAGC
AAGGCTCAAATGTGAGTGCATTCT
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