EY659264

Overview
NameEY659264
Unique NameEY659264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:110..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18
Identity = 39/90 (43.33%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  155 SNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 424
            SN   +L+VVDF+A+WCGPC+ I PF   + +K P+V+F+++DVD+ + VA+   V+ MPTF F K  + V +  G+ KE+L++ I K++
Sbjct:   16 SNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKYM 105          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  167 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 412
            ++LVVVDF+A+WCGPC+ I PF   L  K  +V+F+++DVD+ + VAT   V+ MPTF F K GK V +  G+ KE+L++TI
Sbjct:   20 EKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.079e-17
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  131 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTF-MFLKEGKIVDKVVGSKKEELQQTI 412
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF  F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.102e-17
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  170 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK-IVDKVVGSKKEELQQTIAKH 421
            +LVV+DFTASWCGPC+ IAP   E+AK+ P+V+F KVDVDE    A    ++AMPTF F K GK + D V G+ +  L++ I K+
Sbjct:   21 KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.357e-17
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 2
Query:  104 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 412
            +V+   + E+WN  + ++      +V  FTA WC P  F+  F  ELA    + LFL VDVDE+K VA+   V+AMPTF+FLK+G  +DK+VG+  +E+++ +
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.357e-17
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 2
Query:  137 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 439
            NE L+KS ++ +L++VDF A+WCGPCR I+P    L+ +  N  FLKV+ D  + +   +++ AMPTF+F K  + VD V G+ +  +  TI KH ++  A
Sbjct:   13 NEILEKS-DSNRLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKHYSSTPA 112          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.659e-16
Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  140 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 427
            EQL + +  K ++++DF A+WCGPC+ IAP   ELA     ++F KVDVDE + + + + V+ MPTF+F K G  ++ + G  ++EL+Q + +H++
Sbjct:   19 EQLIRQHPEK-IIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVS 113          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 4.535e-16
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 2
Query:  170 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIA 415
            +LVVVDF A+WCGPC+ IAP + + +++ P   F K+DVDEL  VA    V AMPT +  K GK V KVVG+    ++Q IA
Sbjct:   19 KLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 100          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.923e-16
Identity = 43/107 (40.19%), Postives = 67/107 (62.62%), Query Frame = 2
Query:  107 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 421
            V+    + A++  L+ + +  +LVVVDFTA+WCGPC+ I P    L+K     NV+FLKVDVD+   V++   ++ MPTF F K G+ +D+  G+ ++ L+Q I  H
Sbjct:    2 VVHIENLNAFSAALKNAGD--KLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 7.735e-16
Identity = 45/117 (38.46%), Postives = 71/117 (60.68%), Query Frame = 2
Query:   68 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 418
            P +  M   E  +V    + E +   L+++ E  +LV VDF+A+WCGPCR I PF   L+ K  +V+FL+VD D  + V  + A+  +PTF F K+ + VD++ G+ KE+L+  IA+
Sbjct:  437 PEEETMEFPEGDKVKVILSKEDFEASLKEAGE--RLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAE 551          
The following BLAST results are available for this feature:
BLAST of EY659264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO_OPHHA2.175e-1843.33Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_CHICK2.840e-1850.00Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_PONAB1.079e-1747.37Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_GEOCY4.102e-1751.76Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
TRXL4_ARATH5.357e-1740.78Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
NGLY1_CAEBR5.357e-1740.59Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO1_CAEEL2.659e-1639.58Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
TRX1_YEAST4.535e-1650.00Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO_ICTPU5.923e-1640.19Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
TXND2_HUMAN7.735e-1638.46Thioredoxin domain-containing protein 2 OS=Homo sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659264 ID=EY659264; Name=EY659264; organism=Citrus sinensis; type=EST; length=655bp
ATCACCAATAGCAANAAAGCGAGGGAGAGAATAGAAGTATCGTTGGGTGG
AGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAG
GGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCA
GAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCGT
GGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAG
AAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAG
TGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGA
AAGAGGGGAAGATTGTGGACAAGGTGGTTGGATCAAAGAAAGAGGAACTG
CAGCAGACTATTGCCAAGCATCTGGCAACTGCCTCTGCCTAATAAGTTAT
AACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGC
TATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTT
GTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGG
TCTTTACAATAATTTAATTTCATATTTGGGGTAAAAAAAAAAAAAANNAA
NNAAA
back to top