EY659085

Overview
NameEY659085
Unique NameEY659085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: SHOC2_DANRE (Leucine-rich repeat protein SHOC-2 OS=Danio rerio GN=shoc2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.070e-12
Identity = 56/182 (30.77%), Postives = 94/182 (51.65%), Query Frame = 1
Query:   19 ITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPK 564
            +T ++L    L+ LP  + CLS L  L L++  SL SLP  L  LK L +L +   + L+ +P  +  + +L  L+     IT V   I  L ++  +    NK   LP    +  L NL  L++    +  LP+ +G  + +T L L+ N+   +PE+I  L+++ RL +RY  RL ++P+
Sbjct:  104 LTELYLYSNKLQSLPPEVGCLSGLVTLALSE-NSLTSLPDSLDNLKKLRMLDLRH-NKLREIPAVVYRVSSLTTLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPA--EIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNDLLDLPETIGNLASINRLGLRY-NRLSAIPR 280          
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: LRC69_MOUSE (Leucine-rich repeat-containing protein 69 OS=Mus musculus GN=Lrrc69 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.070e-12
Identity = 60/189 (31.75%), Postives = 96/189 (50.79%), Query Frame = 1
Query:   16 NITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVR-LKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLPCNL 579
            N   + L+G  + ++PS++E L  L  L L +    K  P  L  L  L +L + G ++LQ +PEE+  L +L  LH  G  I  + P +   L R+  +    N+  SLP    +  L++L  L+LN   +  +P+ L  L  ++ LHL  N    IPE I  L NL++LF+     ++ LP+  C+L
Sbjct:   15 NTKILTLNGKRITKMPSTLEKLPNLKTLDLQNNSISKVCPE-LRTLTQLTLLNL-GNNHLQEVPEEIKYLTSLKNLHLFGNRICRIAPGVFNGLHRLIMLNLNDNRLTSLPQ--EIGRLRSLTYLSLNRNNLTVIPKELCSLEHLSELHLNYNQIVYIPEEIKFLKNLQQLFL-VRNNIEELPEEICHL 198          
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: LRC8D_RAT (Leucine-rich repeat-containing protein 8D OS=Rattus norvegicus GN=Lrrc8d PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.398e-12
Identity = 55/169 (32.54%), Postives = 90/169 (53.25%), Query Frame = 1
Query:   28 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEEL---GNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERL 525
            +H DGT L  L +S++ +  ++ L L +C+ L+ +P  +  L +L  L  D  SN  R  EE+    +L+ L  L      I  +PPSI  +K +  +YF  NK  SLP+  +V  LQ LR L+++   I  +P  +GLL ++  LH+ GN  + +P+ + +   L  L
Sbjct:  618 IHNDGTKLLVL-NSLKKMMNVAELELQNCE-LERIPHAIFSLSNLQEL--DLKSNSIRTIEEIISFQHLKRLTCLKLWHNKIVAIPPSITHVKNLESLYFSNNKLESLPV--AVFSLQKLRCLDVSYNNISTIPIEIGLLQNLQHLHITGNKVDVLPKQLFKCVKLRTL 780          
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: LRC8D_HUMAN (Leucine-rich repeat-containing protein 8D OS=Homo sapiens GN=LRRC8D PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.384e-12
Identity = 51/168 (30.36%), Postives = 91/168 (54.17%), Query Frame = 1
Query:   28 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELG--NLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERL 525
            +H DGT L  L +S++ +  ++ L L +C+ L+ +P  +  L +L  L +   +N++ + E +   +L+ L  L      I  +PPSI  +K +  +YF  NK  SLP+  +V  LQ LR L+++   I  +P  +GLL ++  LH+ GN  + +P+ + +   L  L
Sbjct:  618 IHNDGTKLLVL-NSLKKMMNVAELELQNCE-LERIPHAIFSLSNLQELDLKS-NNIRTIEEIISFQHLKRLTCLKLWHNKIVTIPPSITHVKNLESLYFSNNKLESLPV--AVFSLQKLRCLDVSYNNISMIPIEIGLLQNLQHLHITGNKVDILPKQLFKCIKLRTL 780          
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: LRC40_XENTR (Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.384e-12
Identity = 64/204 (31.37%), Postives = 98/204 (48.04%), Query Frame = 1
Query:   16 NITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSXDAHHCTALESLP 624
            N+ ++ L    LEELP SI  LS L  L +++   L+S+ S + +L  L    +   + L  LP E+G ++ L  L      +  VP S+  ++ +  +Y  +NK   LP    +  L  L++L++ +  I  L PE L  LSS++ L L  N  + +PE I  L+ LERL +        L  LPC L S        LE  P
Sbjct:  152 NLKSLLLQHNQLEELPDSIGHLSILEELDVSN-NCLRSISSSVGQLTGLVKFNLSS-NKLTALPTEIGKMKNLKQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP---ELPFLTKLKELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPEEISLLNGLERLDLSN----NDLGSLPCTLGSLPNLKSLQLEGNP 346          
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: YG015_MACFA (Leucine-rich repeat and death domain-containing protein LOC401387 homolog OS=Macaca fascicularis GN=QtsA-18164 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 55/232 (23.71%), Postives = 102/232 (43.97%), Query Frame = 1
Query:   28 MHLDGTALEELPSSIECLSKLSHLGLADCKSL----------------------KSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITF------------------------SVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLS 585
            + ++G  + E+P+ I    +L HL L++ K L                      K +P+ +  + SL VLI+  C+  +  P EL  LE L +L      + ++   I  LKR++ + F  N+ +  PI                           +  +  L++L++++  I E+P ++G L ++ +LH   N    IP S++ L++L++L +     L +LP    NL S
Sbjct:  495 LSVNGNYISEIPADISFSKQLLHLELSENKLLIFSEHFCSLINLKYLDLGKNQIKKIPASISNMISLHVLILC-CNKFETFPRELCTLENLRVLDLSENQLQKISSDICNLKRIQKLNFSSNQFIHFPIELCQLQSLEQLNISQIKGRKLTRLPGELSNMTQLKELDISNNAIREIPRNIGELRNLVSLHAYNNQISYIPPSLLSLNDLQQLNLS-GNNLTALPSAIYNLFS 724          
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: MFHA1_HUMAN (Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   28 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNL 516
            + +    L  LP  I  L  L  L L+  + L +LP+G C+L SL+ L++D  + LQ LP +   L+ L +L+       E P +++ L  +  +Y  RN+  S+P   S  GL  L  L L++  I  LP+S+  L+ +  L L+GN    +P+   QLS +
Sbjct:  209 LDVSSNRLRGLPEDISALRALKILWLSGAE-LGTLPAGFCELASLESLMLDN-NGLQALPAQFSCLQRLKMLNLSSNLFEEFPAALLPLAGLEELYLSRNQLTSVPSLIS--GLGRLLTLWLDNNRIRYLPDSIVELTGLEELVLQGNQIAVLPDHFGQLSRV 367          
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: LAP2_HUMAN (Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 55/182 (30.22%), Postives = 95/182 (52.20%), Query Frame = 1
Query:   16 NITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLP 561
            N+T ++L+   LE LP++   L+KL  L L +   LK LP  + +L  L+ L + G +    +PE L  L  L         +T +P  I  LK++   Y   +K     +   +   +NL+DL L+   + +LPE++G L ++TTL ++ N    +P+SI  L ++E L   + E +++LP
Sbjct:  139 NLTQLYLNDAFLEFLPANFGRLTKLQILELRE-NQLKMLPKTMNRLTQLERLDL-GSNEFTEVPEVLEQLSGLKEFWMDANRLTFIPGFIGSLKQLT--YLDVSKNNIEMVEEGISTCENLQDLLLSSNSLQQLPETIGSLKNITTLKIDENQLMYLPDSIGGLISVEELDCSFNE-VEALP 315          
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: LRC8D_MOUSE (Leucine-rich repeat-containing protein 8D OS=Mus musculus GN=Lrrc8d PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.311e-12
Identity = 51/168 (30.36%), Postives = 90/168 (53.57%), Query Frame = 1
Query:   28 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELG--NLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERL 525
            +H DGT L  L +S++ +  ++ L L +C+ L+ +P  +  L +L  L +   +N++ + E +   +L+ L  L      I  +PPSI  +K +  +YF  NK  SLP   +V  LQ LR L+++   I  +P  +GLL ++  LH+ GN  + +P+ + +   L  L
Sbjct:  619 IHNDGTKLLVL-NSLKKMMNVAELELQNCE-LERIPHAIFSLSNLQELDLKS-NNIRTIEEIISFQHLKRLTCLKLWHNKIVAIPPSITHVKNLESLYFSNNKLESLPT--AVFSLQKLRCLDVSYNNISTIPIEIGLLQNLQHLHITGNKVDILPKQLFKCVKLRTL 781          
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: LAP1_CAEEL (Protein lap1 OS=Caenorhabditis elegans GN=let-413 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 5.311e-12
Identity = 55/169 (32.54%), Postives = 86/169 (50.89%), Query Frame = 1
Query:   28 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIR 534
            + L    LE LP+ I  L+ L      D  SL SLP  +   + LD L +   + + RLPE LG +  L  L+     I E+P S   LKR++ +   RN   +L  T  +   Q+L +L L    + +LP+++G L  +TTL+++ NN   IP++I    +L  L +R
Sbjct:  179 LDLGQNELEALPAEIGKLTSLREF-YVDINSLTSLPDSISGCRMLDQLDVSE-NQIIRLPENLGRMPNLTDLNISINEIIELPSSFGELKRLQMLKADRNSLHNL--TSEIGKCQSLTELYLGQNFLTDLPDTIGDLRQLTTLNVDCNNLSDIPDTIGNCKSLTVLSLR 343          

HSP 2 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 51/199 (25.63%), Postives = 98/199 (49.25%), Query Frame = 1
Query:    1 PRVRGNITTM---HLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLP---------------------ITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERL 525
            P   GN+T +   +L+  ++ +LP +++    L+ L L+       LP  +C+  S+ +L ++  S L  LP  +G+L  L +L A    +  +P SIV L+++  +  G+N+  +LP                     +  S+ G + L  L++++  I+ LPE+LG + ++T L++  N    +P S  +L  L+ L
Sbjct:   75 PAEIGNLTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSS-NPFTRLPETICECSSITILSLNETS-LTLLPSNIGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGKLTSLREFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELPSSFGELKRLQML 271          
The following BLAST results are available for this feature:
BLAST of EY659085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
SHOC2_DANRE1.070e-1230.77Leucine-rich repeat protein SHOC-2 OS=Danio rerio ... [more]
LRC69_MOUSE1.070e-1231.75Leucine-rich repeat-containing protein 69 OS=Mus m... [more]
LRC8D_RAT1.398e-1232.54Leucine-rich repeat-containing protein 8D OS=Rattu... [more]
LRC8D_HUMAN2.384e-1230.36Leucine-rich repeat-containing protein 8D OS=Homo ... [more]
LRC40_XENTR2.384e-1231.37Leucine-rich repeat-containing protein 40 OS=Xenop... [more]
YG015_MACFA4.066e-1223.71Leucine-rich repeat and death domain-containing pr... [more]
MFHA1_HUMAN4.066e-1231.90Malignant fibrous histiocytoma-amplified sequence ... [more]
LAP2_HUMAN4.066e-1230.22Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1 SV=2[more]
LRC8D_MOUSE5.311e-1230.36Leucine-rich repeat-containing protein 8D OS=Mus m... [more]
LAP1_CAEEL5.311e-1232.54Protein lap1 OS=Caenorhabditis elegans GN=let-413 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-C04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659085 ID=EY659085; Name=EY659085; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGCGGTAATATAACAACGATGCATTTAGATGGAACTGCACT
GGAGGAACTGCCTTCGTCCATCGAGTGTCTATCTAAGCTTTCGCACTTGG
GCCTTGCAGATTGTAAAAGTCTCAAGAGTCTCCCAAGCGGCCTGTGTAAG
TTGAAATCTCTAGATGTTCTCATTATCGATGGTTGCTCGAATCTTCAGAG
ATTGCCCGAGGAACTTGGAAATTTAGAAGCTTTGGATATTTTGCACGCTA
TAGGAACTTCTATAACAGAAGTACCGCCATCCATCGTCCGTTTGAAAAGG
GTTCGTGGAATATATTTCGGGAGAAACAAGGGTTTATCATTGCCAATCAC
ATTCTCTGTAGATGGCTTGCAAAATCTAAGGGATTTAAATCTAAATGATT
GCGGCATCATGGAGTTACCTGAAAGTCTTGGCCTGTTATCCTCAGTAACA
ACACTGCATCTAGAGGGAAACAATTTTGAGAGAATACCAGAAAGCATCAT
ACAACTTTCTAATTTGGAAAGGCTCTTCATAAGGTATTGCGAGAGGCTTC
AATCCTTACCAAAGCTTCCATGCAATCTACTTTCGNTGGATGCACATCAT
TGCACCGCACTGGAATCATTACCAGGTTATTCCCCAGTAGTGATGAATCT
TATTTACGGACTTTATACCTGAGCGATAATTTAATTNGNATCNGAATGAG
ATTAGAGGGTTTGTCAAAGGAGCTCTGCAGAAAATTCACTTTTGGCAACG
CACGTCTAGAGAAACACGGAAAAGGNATGCGTTAATACTCTCCTTTTATT
TAAAAAGAGCTTAAGAAAGATGCCGATGACCATACCCGGGGGGGGGAATA
TATGGTAATGATACTTGCCCCCTTCTTGACGCCATATTTTACGTAATTCA
ACTTTCCGATAAATTTCGGT
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