EY659085

Overview
NameEY659085
Unique NameEY659085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: LRC40_DANRE (Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.872e-11
Identity = 53/180 (29.44%), Postives = 90/180 (50.00%), Query Frame = 1
Query:  103 LADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSN-----------------------LERLFIRYCERLQSLPKLPC 573
            L     L+S+P  +  L +L VL I   + L  LP+ +G+LE L  L      +TE+P  + RL  +R ++  +N  L   I   +  L NL +L+L++  ++++PESL  L ++  L L  N  + +P +I Q+ N                       LE+L++R+  +L+ LP+LPC
Sbjct:   86 LLSSNKLQSIPDDVKLLPALVVLDIHD-NQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRLTNLRCLHLQQN--LIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLKSLPPAISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRH-NKLRYLPELPC 261          
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 58/188 (30.85%), Postives = 90/188 (47.87%), Query Frame = 1
Query:   28 MHLDGTALE-ELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSIT-EVPPSIVRLKRVRGIYFGRNK-GLSLPITFSVDGLQNLRDLNLNDCGIM-ELPESLGLLSSVTTLHLEGNNFERI-PESIIQLSNLERLFIRYCERLQSLPKLPCN 576
            +HL G  L  +LP  +  L++L H+ +       ++PS    L +L    +  CS    LP+ELGNL  L+ L       T E+P S   LK ++ + F  N+   S+P  FS   L+NL  L+L    +  E+PE +G L  +TTL L  NNF  + P  +     LE + +       ++P   C+
Sbjct:  206 IHLAGNVLGGKLPPRLGLLTELQHMEIGYNHFNGNIPSEFALLSNLKYFDVSNCSLSGSLPQELGNLSNLETLFLFQNGFTGEIPESYSNLKSLKLLDFSSNQLSGSIPSGFST--LKNLTWLSLISNNLSGEVPEGIGELPELTTLFLWNNNFTGVLPHKLGSNGKLETMDVSNNSFTGTIPSSLCH 391          
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: SUR8_DROSE (Leucine-rich repeat protein soc-2 homolog OS=Drosophila sechellia GN=Sur-8 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 59/192 (30.73%), Postives = 92/192 (47.92%), Query Frame = 1
Query:   16 NITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSXD 591
            ++T ++L    + +LP  I CL  L +L L +  SL SLP  L     L VL +   + L  +P  +  L +L  L+     IT V   + +L  +  +    NK   L    ++  L NL  L+++   +  LPE +G   +++ L L+ N    IP+SI  L +L RL +RY  RL S+P    N  S D
Sbjct:  187 HLTELYLYSNKIGQLPPEIGCLVSLRNLALNE-NSLTSLPESLQNCSQLKVLDLRH-NKLAEIPSVIYRLRSLTTLYLRFNRITAVADDLRQLVNLTMLSLRENKIRELGS--AIGALVNLTTLDVSHNHLEHLPEDIGNCVNLSALDLQHNELLDIPDSIGNLKSLVRLGMRY-NRLSSVPATLKNCKSMD 373          
BLAST of EY659085 vs. ExPASy Swiss-Prot
Match: LR10L_HUMAN (LRRC10-like protein ENSP00000367315 OS=Homo sapiens PE=4 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 53/172 (30.81%), Postives = 85/172 (49.42%), Query Frame = 1
Query:   52 EELPSSIE--CLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLP 561
            +ELPS  E    S    L L+  + L+ LPS +C L  L  L + G + L+ LPEE+  L  L IL      +  +P  + RL R+  +Y G N+ L+LP  F+   LQ+LR L +    +   P  L  L ++ +L +  N    +P  + +++ L  L++ Y  R +  P
Sbjct:    9 DELPSDAEEQLRSGDQQLELSG-RRLRRLPSAVCALSRLQKLYVSG-TGLRELPEEIEELRELRILALDFNKLERLPDGLCRLPRLTRLYLGGNRLLALPADFA--QLQSLRCLWIEGNFLRRFPRPLLRLVALQSLQMGDNRLRALPAELPRMTGLRGLWL-YGNRFEEFP 175          
The following BLAST results are available for this feature:
BLAST of EY659085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
LRC40_DANRE5.872e-1129.44Leucine-rich repeat-containing protein 40 OS=Danio... [more]
Y5148_ARATH7.668e-1130.85Probable leucine-rich repeat receptor-like protein... [more]
SUR8_DROSE7.668e-1130.73Leucine-rich repeat protein soc-2 homolog OS=Droso... [more]
LR10L_HUMAN7.668e-1130.81LRRC10-like protein ENSP00000367315 OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-C04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659085 ID=EY659085; Name=EY659085; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGCGGTAATATAACAACGATGCATTTAGATGGAACTGCACT
GGAGGAACTGCCTTCGTCCATCGAGTGTCTATCTAAGCTTTCGCACTTGG
GCCTTGCAGATTGTAAAAGTCTCAAGAGTCTCCCAAGCGGCCTGTGTAAG
TTGAAATCTCTAGATGTTCTCATTATCGATGGTTGCTCGAATCTTCAGAG
ATTGCCCGAGGAACTTGGAAATTTAGAAGCTTTGGATATTTTGCACGCTA
TAGGAACTTCTATAACAGAAGTACCGCCATCCATCGTCCGTTTGAAAAGG
GTTCGTGGAATATATTTCGGGAGAAACAAGGGTTTATCATTGCCAATCAC
ATTCTCTGTAGATGGCTTGCAAAATCTAAGGGATTTAAATCTAAATGATT
GCGGCATCATGGAGTTACCTGAAAGTCTTGGCCTGTTATCCTCAGTAACA
ACACTGCATCTAGAGGGAAACAATTTTGAGAGAATACCAGAAAGCATCAT
ACAACTTTCTAATTTGGAAAGGCTCTTCATAAGGTATTGCGAGAGGCTTC
AATCCTTACCAAAGCTTCCATGCAATCTACTTTCGNTGGATGCACATCAT
TGCACCGCACTGGAATCATTACCAGGTTATTCCCCAGTAGTGATGAATCT
TATTTACGGACTTTATACCTGAGCGATAATTTAATTNGNATCNGAATGAG
ATTAGAGGGTTTGTCAAAGGAGCTCTGCAGAAAATTCACTTTTGGCAACG
CACGTCTAGAGAAACACGGAAAAGGNATGCGTTAATACTCTCCTTTTATT
TAAAAAGAGCTTAAGAAAGATGCCGATGACCATACCCGGGGGGGGGAATA
TATGGTAATGATACTTGCCCCCTTCTTGACGCCATATTTTACGTAATTCA
ACTTTCCGATAAATTTCGGT
back to top