EY659069

Overview
NameEY659069
Unique NameEY659069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659069_ssr458 microsatellite EY659069_ssr458:458..469. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:7..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659069 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.739e-25
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  129 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 407
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A  +I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   25 AISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of EY659069 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.084e-25
Identity = 53/93 (56.99%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  129 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 407
            A++CG VT  LAPCIP+L TGG  P   CC+GV+ L  AA TT DRQAACNCLK A G I  + P  AA LP +C V IPYKIS +T+C+ ++
Sbjct:   26 AVSCGTVTGDLAPCIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of EY659069 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.084e-25
Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  117 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 407
            P   A+TCGQVT++LAPC+P+L   G  P   CC GV+ L G A+TT DRQ AC CLK A  +  G+    AA LPS C V IPYKISPSTDCS+V+
Sbjct:   20 PHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of EY659069 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.801e-24
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 3
Query:  132 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 404
            +TCGQV  +LA CI FL+ GG   PP CC+GV+++  ++RTT DR+A C+CLK A G +RGI PN A  LP +CGV IPYKIS ST+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of EY659069 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.352e-24
Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = 3
Query:  120 VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 407
            V  AI+CG V  SLAPC  +L  GG   PP CC+GV++LN  A+TTPDRQ AC C++    +I G+ P++A+GLP +CGV IPY IS ST+C+ ++
Sbjct:   21 VDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of EY659069 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.352e-24
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  129 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 407
            AI+CGQV+++L+PCI + R  G  PP  CCSGV+ L GAA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DCS++R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of EY659069 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.072e-24
Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  117 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 407
            P   A+TCGQVT++LAPC+P+L   G  P   CC GV+ L G A+TT DRQAAC CLK A  +   +    AA LPS C V IPYKISPSTDCS+V+
Sbjct:   20 PHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of EY659069 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.072e-24
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  129 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 407
            AI+CGQV+++L+PCI + R  G  PP  CCSGV+ L GAA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DCS++R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of EY659069 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.072e-24
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  129 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 407
            AI+CGQV+++L+PCI + R  G  PP  CCSGV+ L GAA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DCS++R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of EY659069 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.240e-24
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  129 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 404
            AITCGQV +++ PC+ + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DCSRV
Sbjct:   25 AITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
The following BLAST results are available for this feature:
BLAST of EY659069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP5_LENCU4.739e-2558.06Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP3_LENCU8.084e-2556.99Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP2_SOLPN8.084e-2556.70Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP1_PHAAU1.801e-2456.04Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP3_ARATH2.352e-2452.08Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLT41_HORVU2.352e-2454.84Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTP2_SOLCI3.072e-2456.70Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLT43_HORVU3.072e-2454.84Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU3.072e-2454.84Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP1_ORYSJ5.240e-2457.61Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659069 ID=EY659069; Name=EY659069; organism=Citrus sinensis; type=EST; length=621bp
CCACGCGTCCGAGAACCTGATAACTAGCTATAACCAAGCAAAAGCCTCCC
TGAAGAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTG
CATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTGA
CAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTTT
CCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAG
AACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACG
GAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAA
TGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTAG
GGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGAC
TGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGAA
CGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTTG
CTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGATT
AAAAAAAAAAAAAAAAAAAAA
back to top