DY305482
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 3.412e-13 Identity = 56/163 (34.36%), Postives = 77/163 (47.24%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 551 RY V ++RRREGKTDY R +LI ++ R VVR TN+ I Q+I A + GD L +A + EL YG + +N AAY TG+L A V+A D+ A+LD+GL + T G +VF +PH E+ Sbjct: 6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADHPA----------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEE 135
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_NATPD (50S ribosomal protein L18P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 7.602e-13 Identity = 53/170 (31.18%), Postives = 75/170 (44.12%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSK 572 RY V +RRRE +T+Y R+RL+ K R V R +N AQ++ GD +ASA + +L +G E N AAY TGLL +R ++ G D A+LD+GL T GN+VF +PH+E FA + + Sbjct: 6 RYTVPMRRRREARTNYHQRLRLLKSGKP-------RLVARKSNNQTKAQLVVTGPQGDETVASATSADLEAFGWEAPTGNLPAAYLTGLLAGKRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFAVQEGVIDAGLEVPHNEDVFADWQR 142
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METBU (50S ribosomal protein L18P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 7.602e-13 Identity = 49/165 (29.70%), Postives = 77/165 (46.67%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 557 RY+V ++RRREG+TDY R+RL+ ++ R VVR + + + Q+++ GD+ L+SA + EL +YG E N AAY TGLL + L E Y +LD+G+ ++ G+RV+ +PH+ F Sbjct: 6 RYKVAFRRRREGRTDYHQRLRLLLSRED-------RVVVRKSARHMQIQLVAPDANGDVTLSSAISKELAKYGYEGSTGNTTAAYLTGLLFGYKTL----------------AEGYE----------SGVLDIGIQASSAGSRVYAALKGVVDSGLDVPHNSSVF 137
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.212e-12 Identity = 58/222 (26.13%), Postives = 97/222 (43.69%), Query Frame = 3 Query: 66 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731 Y+V++KRRREGKT+Y R +L++ DK R VVR T+ Q++ GD L SA + L +G N +AAY TG L ++ L EG+ E +LD+G+ + G +++ IPH++ + +DS+ I H+A Y ++ +DE + F +YI+ G+ + + + Sbjct: 7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKALN--------EGYDE------------------TILDIGVQPSIKGTKIYAVLKGALDAGLYIPHND---SILPEDSR----------IRGEHIAQYAESMDDDEK---NAKFANYIRCGLSPEEIPD 179
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_HALLT (50S ribosomal protein L18P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.889e-12 Identity = 59/201 (29.35%), Postives = 84/201 (41.79%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEP 665 RY+V +RRRE +TDY R+RL+ K R V R +N + AQ+++ GD A+A + EL YG + N +AY TG L R +DA + A+LD+GL T GN+ F IPH++ A +S+ + H+AAY L DEP Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNAHVRAQLVTPGSDGDETHAAASSEELGEYGWDAPTGNLPSAYLTGYLAGARA-----VDAGLD---------------------EAVLDIGLNTATPGNKTFAVQEGAIDAGLEIPHNDDVLADWSRTRGE-------------HIAAYAEQL--DEP 158
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METAC (50S ribosomal protein L18P OS=Methanosarcina acetivorans GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 3.773e-12 Identity = 60/206 (29.13%), Postives = 98/206 (47.57%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQS 680 RY+V ++RRREG+T+Y R++L+ ++ R VVR +++++ Q+I+ + GDI +SA ++EL +YG N AAY TGLL LK L+ YEG +LD+GL ++ G+RV+ IP S + F +++ E H+A Y R D PE++++ Sbjct: 6 RYKVPFRRRREGRTNYHLRLKLLLSRQD-------RVVVRKSSRNVQIQLIAPTPDGDITYSSAVSNELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEG---------------------GILDIGLQASSAGSRVYAALKGVVDSGFEIPCSPEVF----PPDERIRGE---------HIAGY-REESSDLPEQFEA 164
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 3.773e-12 Identity = 66/228 (28.95%), Postives = 99/228 (43.42%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIP------HSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNL 725 RY+V +RRREGKT+Y R R+I RF+VR T I Q+ +A GD+++A+A+++EL R+G + G N +AAY TGLL A L+ LE EY A+ D+GL + G VF +P SE+R G H+A+Y + L E+ + F Y+ G++ ++L Sbjct: 6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAA---LRALEKGVEY-----------------------AVPDIGLHRPVKGALVFAAIKAANDAGLKVPMGGEVAPSEERIRG-------------------EHIASYAKILREN--GLLEKRFSRYLANGLQPEDL 179
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METBF (50S ribosomal protein L18P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl18p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.098e-11 Identity = 58/206 (28.16%), Postives = 93/206 (45.15%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQS 680 RY+V ++RRREG+T+Y R++L+ ++ R VVR + +++ Q+I+ + GDI +SA + EL +YG N AAY TGLL + LK YEG +LD+GL ++ G+RV+ +P S + F + I H+A Y R D PE++++ Sbjct: 6 RYKVPFRRRREGRTNYHLRLKLLISKQD-------RVVVRKSARNVQIQLIAPTPEGDITYSSAVSSELAKYGYTGVTGNTTAAYLTGLLFGLKSLK-----KGYEG---------------------GILDIGLQASSAGSRVYAALKGIVDSGFEVPCSPEVFPSDER-------------IRGEHIAEY-REESSDLPEQFEA 164
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METMA (50S ribosomal protein L18P OS=Methanosarcina mazei GN=rpl18p PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 1.872e-11 Identity = 59/206 (28.64%), Postives = 93/206 (45.15%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQS 680 RY+V ++RRREG+T+Y R++L+ ++ R VVR + +++ Q+++ + GDI +SA + EL +YG N AAY TGLL LK L+ YEG +LD+GL ++ G+RV+ IP S F + I H+A Y R D PE++++ Sbjct: 6 RYKVPFRRRREGRTNYHLRLKLLLSGQD-------RVVVRKSARNVQIQLLAPTPEGDITYSSAVSSELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEG---------------------GILDIGLQASSAGSRVYAALKGIVDSGFEIPCSSDVFPSDER-------------IRGEHIAEY-REESSDLPEQFEA 164
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.445e-11 Identity = 56/166 (33.73%), Postives = 79/166 (47.59%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 557 RY+V ++RRREGKTDY R++LI + K R VVR T+ + AQI+ GD VLA+A + EL + +G + N +AAY TGLL+ + E VE A+LD+GL + G+RV+ +P SE F Sbjct: 6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVF 138 The following BLAST results are available for this feature:
BLAST of DY305482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 90
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Sequences
The
following sequences are available for this feature:
EST sequence >DY305482 ID=DY305482; Name=DY305482; organism=Citrus sinensis; type=EST; length=1272bpback to top |