DR405978

Overview
NameDR405978
Unique NameDR405978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10693 contig Csv1_Contig10693:103..828. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405978 vs. ExPASy Swiss-Prot
Match: MAN5_ARATH (Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis thaliana GN=MAN5 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.717e-39
Identity = 65/139 (46.76%), Postives = 92/139 (66.19%), Query Frame = 1
Query:  193 GFIRT*GSHFLLNGNLYYANGFNAYWLMYVDSDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFL-TSDDDFFRNPVVK 606
            GF++  G+ F+++    Y NG+N+YW M    D   R+ V       A  GLTV RTWAF+DGGY  LQ SPG ++E++F+ LD VIAEARK+ ++L+LSL NN  ++GGK QYV WA  +G  L +S+D FF +P ++
Sbjct:   40 GFVKRNGTQFVVDDKPLYVNGWNSYWFMDHAVDEHSRNLVGEMLEAGAKMGLTVCRTWAFNDGGYNALQISPGRFDERVFQALDHVIAEARKHDVRLLLSLVNNLQAYGGKTQYVKWAWQEGVGLSSSNDSFFFDPSIR 178          

HSP 2 Score: 46.9802 bits (110), Expect = 4.717e-39
Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:  635 NTFTGIHYKDDPTIMAWELMNEPRC 709
            N+ TGI Y++DPTI AWEL+NEPRC
Sbjct:  193 NSVTGIEYRNDPTIFAWELINEPRC 217          
BLAST of DR405978 vs. ExPASy Swiss-Prot
Match: MAN6_ORYSJ (Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa subsp. japonica GN=MAN6 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 3.014e-31
Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  211 GSHFLL--NGNLYYANGFNAYWLMYVDSDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLT-SDDDFFRNPVVK 606
            G+HF+    G+  Y NG+N+YWL+   S     +  +         GL+V RTWAFSDGG   LQ SPG ++E +F+ LD+VI EAR+  I+LIL L NN D+ GGK QYV WA++ G  +T S D F+ +P +K
Sbjct:   58 GTHFVDADTGSPLYVNGWNSYWLLPARSP----ALAAEMLRRGRRMGLSVCRTWAFSDGGPGALQISPGRFSEAVFQVLDYVIYEARRNHIRLILCLVNNLDNLGGKAQYVQWAQAAGANMTNSTDSFYSHPTIK 188          

HSP 2 Score: 43.1282 bits (100), Expect = 3.014e-31
Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  635 NTFTGIHYKDDPTIMAWELMNEPRC 709
            N+++ I Y D+P I AWELMNEPRC
Sbjct:  203 NSYSRIRYSDEPAIFAWELMNEPRC 227          
The following BLAST results are available for this feature:
BLAST of DR405978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MAN5_ARATH4.717e-3946.76Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis ... [more]
MAN6_ORYSJ3.014e-3145.19Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248F20 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248F20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405978 ID=DR405978; Name=DR405978; organism=Citrus sinensis; type=EST; length=711bp
GGGGGCAGTTCTAAGAGGAAAAACTTCACGAGTTCACTAATAAAAATATA
GCCTCATCTCCACTGCTCCTTATCCACTCAGACACAGAGAGAGTGAAAGA
GGATGAAGCTCTTGCATTTAGCTTTCACAATCTTCTTAGCCTTTTTCATC
CACCGGCAATCTTTCAACGTCCTACATGTTGAAGCAGGAGATGGATTTAT
AAGAACATGAGGATCGCATTTTCTGTTGAATGGTAATCTTTACTATGCAA
ATGGATTTAATGCATATTGGTTGATGTATGTAGATTCTGACCCATCTCAG
AGATCCAAAGTATCAACTGCTTTTCATGAAGCTGCAAGCCATGGCCTCAC
TGTTGCCAGAACTTGGGCTTTCAGTGATGGTGGTTACAGACCCTTACAGC
GTTCCCCTGGCTCCTACAATGAGCAAATGTTTAAGGGATTGGATTTTGTG
ATAGCTGAGGCTAGAAAGTATGGGATCAAGCTCATATTGAGCTTGGCCAA
CAACTATGATAGTTTTGGAGGGAAGAAGCAGTATGTGAACTGGGCTAGAA
GTCAAGGCCAATTCCTCACATCTGATGATGATTTCTTCAGAAACCCTGTT
GTTAAGGGTTACTACAAGAACCTTATCAAGATATAATACCTTTACTGGAA
TTCACTACAAAGATGACCCGACAATTATGGCATGGGAGCTTATGAATGAG
CCGAGATGCAC
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