DR405977

Overview
NameDR405977
Unique NameDR405977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6306 contig Csv1_Contig6306:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_NEIMB (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup B GN=galE PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.315e-46
Identity = 92/187 (49.20%), Postives = 132/187 (70.59%), Query Frame = 3
Query:  165 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAH 722
            K ILVTGG G+IGSHTV+ LL  G++ V++DNL N+S   + ++K + G +   + F++ D+RD+  L  +FA+ +  +VIHFAGL+AVGESV +P+ Y+DNN+ G++ L E MA  G  ++VFSSSATVYG P  VP TE+ P  +  +PYG +K  +E I  D+ ++D  W +ILLRYFNP+GAH
Sbjct:    2 KKILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPRLKTITGQE---IPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPPGDTTSPYGASKSMVERILTDIQKADPRWSMILLRYFNPIGAH 185          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_HAEIN (UDP-glucose 4-epimerase OS=Haemophilus influenzae GN=galE PE=3 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.717e-46
Identity = 94/185 (50.81%), Postives = 134/185 (72.43%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAH 722
            ILVTGGAGYIGSHTV++LL  G + VV+DNL N+S  ++ +VK++ G +     F++ D+ D+A L+ +FA+ +  +VIHFAGL+AVGESVQKP  Y+ NN+ GT+ L++ M   G  N VFSSSATVYG PK++P TE+  +    NPYG +K  +E+I RD  +++ ++ + +LRYFNPVGAH
Sbjct:    3 ILVTGGAGYIGSHTVVELLNVGKEVVVLDNLCNSSPKSLERVKQITGKEAK---FYEGDILDRALLQKIFAENEINSVIHFAGLKAVGESVQKPTEYYMNNVAGTLVLIQEMKKAGVWNFVFSSSATVYGDPKIIPITEDCEVGGTTNPYGTSKYMVEQILRDTAKAEPKFSMTILRYFNPVGAH 184          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_YEREN (UDP-glucose 4-epimerase OS=Yersinia enterocolitica GN=galE PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.996e-46
Identity = 94/187 (50.27%), Postives = 133/187 (71.12%), Query Frame = 3
Query:  168 NILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHP 725
            +IL+TGGAGYIGSHTVL LL  G   VV+DNL N+S  ++A+V ++ G + +   F+  D+ D++ L+ +F+  K  +VIHFAGL++VGESV+KP+ Y+ NN++G+ITLLE M     K L+FSSSATVYG P+ VP TE+  +    NPYG +K+ +E+I +D   +  ++ I  LRYFNPVGAHP
Sbjct:    2 SILITGGAGYIGSHTVLTLLEQGRNVVVLDNLINSSAESLARVSKICGRKPN---FYHGDILDRSCLKLIFSSHKIDSVIHFAGLKSVGESVEKPIEYYQNNVVGSITLLEEMCLANVKKLIFSSSATVYGEPEFVPLTEKARIGGTTNPYGTSKVMVEQILKDFSLAHPDYSITALRYFNPVGAHP 185          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_DROME (Probable UDP-glucose 4-epimerase OS=Drosophila melanogaster GN=CG12030 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.899e-45
Identity = 94/191 (49.21%), Postives = 128/191 (67.02%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEI------AVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAH 722
            +LVTGGAGYIGSHTVL++L  GY  + VDNL NA         A+++V+E+ G +   + F+++D+ D+  + ++F + K   V HFA L+AVGES + PL Y+ NN+ GT  LLE MA +     V+SSSATVYG PK +P TEE P     +PYG+TK F EEI +D+ +SD  W ++ LRYFNPVGAH
Sbjct:    6 VLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEALSRVQEITGKK---VNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCRIPLQYYHNNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHPTGNCTSPYGKTKYFTEEILKDLCKSDKRWAVVSLRYFNPVGAH 193          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_ERWAM (UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.230e-45
Identity = 96/186 (51.61%), Postives = 127/186 (68.28%), Query Frame = 3
Query:  168 NILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAH 722
            +ILVTGGAGYIGSHTVL LL  G   V++DNL NAS  ++ +V++L G      TF + DL D++ L ++F+  +  AVIHFAGL+AVG S +KPL Y+ NN+ GT+ LLE M + G    +FSSSATVYG    VP  E  P+    +PYG +KL +E+I RD  +++ E+K I LRYFNPVGAH
Sbjct:    2 SILVTGGAGYIGSHTVLSLLQRGDDVVILDNLSNASRESINRVEKLTGKTA---TFFEGDLLDRSCLRSVFSAHRISAVIHFAGLKAVGASTRKPLEYYQNNVTGTLVLLEEMRSAGVNQFIFSSSATVYGADAPVPYVETTPIGGTTSPYGTSKLMVEQILRDYAKANPEFKTIALRYFNPVGAH 184          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_SALTI (UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.524e-45
Identity = 92/186 (49.46%), Postives = 124/186 (66.67%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHP 725
            +LVTGG+GYIGSHT +QLL  G+  V++DNL N+    +  ++ L G    + TF + D+R++A +  +        VIHFAGL+AVGESV KPL Y+DNN+ GT+ L+  M A   KNL+FSSSATVYG    +P  E FP     +PYG++KL +E+I  D+ ++  EW I LLRYFNPVGAHP
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGK---HPTFVEGDIRNEALITEILHDHAIDTVIHFAGLKAVGESVAKPLEYYDNNVNGTLRLVSAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPEWSIALLRYFNPVGAHP 185          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_ECOLI (UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.215e-45
Identity = 90/186 (48.39%), Postives = 124/186 (66.67%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHP 725
            +LVTGG+GYIGSHT +QLL  G+  +++DNL N+    +  ++ L G    + TF + D+R++A +  +        VIHFAGL+AVGESVQKPL Y+DNN+ GT+ L+  M A   KN +FSSSATVYG    +P  E FP     +PYG++KL +E+I  D+ ++  +W I LLRYFNPVGAHP
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK---HPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHP 185          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_SALTY (UDP-glucose 4-epimerase OS=Salmonella typhimurium GN=galE PE=3 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.231e-44
Identity = 91/186 (48.92%), Postives = 124/186 (66.67%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHP 725
            +LVTGG+GYIGSHT +QLL  G+  V++DNL N+    +  ++ L G    + TF + D+R++A +  +        VIHFAGL+AVGESV +PL Y+DNN+ GT+ L+  M A   KNL+FSSSATVYG    +P  E FP     +PYG++KL +E+I  D+ ++  EW I LLRYFNPVGAHP
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGK---HPTFVEGDIRNEALITEILHDHAIDTVIHFAGLKAVGESVARPLEYYDNNVNGTLRLVSAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPEWSIALLRYFNPVGAHP 185          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_PASMU (UDP-glucose 4-epimerase OS=Pasteurella multocida GN=galE PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.607e-44
Identity = 92/185 (49.73%), Postives = 130/185 (70.27%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAH 722
            ILVTGGAGYIGSHTV++LL      VV+DNL N+S  ++ +V ++ G Q   + F++ D+ D A L+ +FA+ +  +VIHFAGL+AVGESVQKP  Y+ NN+ G++ L++ M   G  N VFSSSATVYG P+++P TE   +    NPYG +K  +E+I +D+ ++  E+ I +LRYFNPVGAH
Sbjct:    3 ILVTGGAGYIGSHTVVELLNANKDVVVLDNLCNSSPKSLERVAQITGKQ---VKFYQGDILDTALLQKIFAENQIQSVIHFAGLKAVGESVQKPAEYYMNNVTGSLVLIQEMKKAGVWNFVFSSSATVYGDPEIIPITESCKVGGTTNPYGTSKFMVEQILKDIAKATPEFSITILRYFNPVGAH 184          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_NEIGO (UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae GN=galE PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.977e-44
Identity = 85/185 (45.95%), Postives = 126/185 (68.11%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEF-PLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAH 722
            +L+TGG G+IGSHT + L+  GY  V++DNL N+S   + +++++ G    N+ F++ D+RD   L  +F++ +  +VIHFAGL+AVGESV +P  Y+ NN+ G++ L E MA  G   +VFSSSATVYG  + VP TE+  P +  NPYG +K  +E +  D+ ++D  W +ILLRYFNP+GAH
Sbjct:    3 VLITGGTGFIGSHTAVSLVQSGYDAVILDNLCNSSAAVLPRLRQITGR---NIPFYQGDIRDCQILRQIFSEHEIESVIHFAGLKAVGESVAEPTKYYGNNVYGSLVLAEEMARAGVLKIVFSSSATVYGDAEKVPYTEDMRPGDTANPYGASKAMVERMLTDIQKADPRWSVILLRYFNPIGAH 184          
The following BLAST results are available for this feature:
BLAST of DR405977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
GALE_NEIMB1.315e-4649.20UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_HAEIN1.717e-4650.81UDP-glucose 4-epimerase OS=Haemophilus influenzae ... [more]
GALE_YEREN4.996e-4650.27UDP-glucose 4-epimerase OS=Yersinia enterocolitica... [more]
GALE_DROME1.899e-4549.21Probable UDP-glucose 4-epimerase OS=Drosophila mel... [more]
GALE_ERWAM4.230e-4551.61UDP-glucose 4-epimerase OS=Erwinia amylovora GN=ga... [more]
GALE_SALTI5.524e-4549.46UDP-glucose 4-epimerase OS=Salmonella typhi GN=gal... [more]
GALE_ECOLI7.215e-4548.39UDP-glucose 4-epimerase OS=Escherichia coli (strai... [more]
GALE_SALTY1.231e-4448.92UDP-glucose 4-epimerase OS=Salmonella typhimurium ... [more]
GALE_PASMU1.607e-4449.73UDP-glucose 4-epimerase OS=Pasteurella multocida G... [more]
GALE_NEIGO7.977e-4445.95UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae G... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248F19 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248F19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405977 ID=DR405977; Name=DR405977; organism=Citrus sinensis; type=EST; length=727bp
GGGGGTCAGTTTCATTTTTTTCTTTTCCTTTAAATTTCTCTGAGCGAGGC
CAAGCCCAAGTCTCATCACTTCCTTCGTAATTCCCCCGTTTCTTCAAATT
TTCGTGTACTTTGTGCCCTTTTTTTTGGTTCTTCTGATTGGTCTCTCCGT
TAGACTCCATGGCTAAGAACATTTTGGTGACCGGTGGCGCCGGTTACATT
GGAAGCCACACCGTGCTTCAGTTGCTGTTAGGCGGTTACAAAACTGTCGT
CGTCGACAATCTCGATAATGCCTCGGAAATCGCCGTCGCAAAAGTCAAAG
AACTCGCTGGCAATCAAGGCGACAACATGACCTTTCATAAGTTGGATCTC
CGGGACAAAGCAGCGCTGGAAGCATTGTTTGCCAAAACAAAGTTCGGTGC
TGTCATCCATTTTGCTGGACTGGAAGCAGTTGGTGAAAGTGTGCAGAAAC
CATTGCTGTATTTTGACAACAATCTTATTGGAACCATAACTCTCTTGGAA
GTTATGGCAGCACATGGCTGCAAAAATCTGGTCTTTTCATCATCAGCTAC
TGTTTATGGCTGGCCAAAGGTGGTTCCGTGTACAGAAGAGTTCCCGTTAG
AGGCAATGAACCCTTATGGACGTACCAAGCTTTTCATTGAAGAGATTTGC
CGTGATGTCCACCGCTCAGACTCTGAATGGAAGATCATATTGCTGAGATA
TTTCAATCCTGTTGGTGCACATCCAAG
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