DR405977

Overview
NameDR405977
Unique NameDR405977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6306 contig Csv1_Contig6306:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: ARAE3_ARATH (Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.411e-32
Identity = 74/186 (39.78%), Postives = 110/186 (59.14%), Query Frame = 3
Query:  168 NILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHP 725
            ++LVTGGAGYIGSH  L+LL   Y+  +VDNL   +  AV  ++ L    G  + F   DL D  A++ +F++  F AV+HFA +  VGES   PL Y+ N    T+ +LE +A H  K L++SS+   YG P  +P  E  P   +NPYG+ K   E++  D  + +S+  +++LRYFN +G+ P
Sbjct:   71 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNLGAVKVLQGLFPEPG-RLQFIYADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAVARHKVKKLIYSSTCATYGEPDKMPIVEVTPQVPINPYGKAKKMAEDMILDFSK-NSDMAVMILRYFNVIGSDP 254          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: EXOB_RHILT (UDP-glucose 4-epimerase OS=Rhizobium leguminosarum bv. trifolii GN=exoB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.106e-32
Identity = 79/185 (42.70%), Postives = 104/185 (56.22%), Query Frame = 3
Query:  165 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGA 719
            + +LV GGAGYIGSHT L L   GY+ VV DN  N     V       G           D+RD+A L+ + AK K  A++HFA L  VGESV+ P+ +++NN+IGT+TLL    A G    VFSS+   YG P+ VP  E      +NPYGRTK  +E+   D  +  S  + ++LRYFN  GA
Sbjct:    4 ETVLVVGGAGYIGSHTCLDLANKGYRPVVFDNFSNGHREFVRWGPAEEG-----------DIRDRARLDEVLAKHKPAAILHFAALIEVGESVKDPVSFYENNVIGTLTLLSAAQAAGINAFVFSSTCATYGLPQSVPLDETHRQVPINPYGRTKYIVEQALADYDQYGS-LRSVVLRYFNAAGA 176          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_LACHE (UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.725e-30
Identity = 78/183 (42.62%), Postives = 102/183 (55.74%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGA 719
            +LV GGAGYIGSH V +L+  G   +V+D L      AV               F++ D+ D   +  +    K  AV+HFA    V ESV+KPL Y+DNN+ G I+LL+ M     K LVFSSSA  YG PK +P TE+ PL  +NPYG TK+ +E+I     ++D   K   LRYFN  GA
Sbjct:    3 VLVIGGAGYIGSHAVRELVKEGNDVLVLDALYTGHRKAV----------DPKAKFYQGDIEDTFLVSKILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMNDANVKYLVFSSSAATYGIPKKLPITEDTPLNPINPYGETKMMMEKIMAWADKADG-IKYTALRYFNVAGA 174          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_KLEPN (UDP-glucose 4-epimerase (Fragment) OS=Klebsiella pneumoniae GN=galE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.562e-30
Identity = 68/139 (48.92%), Postives = 93/139 (66.91%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTE 587
            +LVTGG+GYIGSHT +QLL  G++ V++DNL N+    +  ++ L G +    TF + D+R++A +  +       AVIHFAGL+AVGESV KPL Y+DNN+ GT+ L+  M A G KN +FSSSATVYG    +P  E
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQRGHEVVILDNLCNSKRRILPVIERLGGKEA---TFIEGDIRNEARMTEILHDHAIEAVIHFAGLKAVGESVAKPLEYYDNNVTGTLKLVSAMRAAGVKNFIFSSSATVYGDQPKIPYVE 138          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GAL10_CANMA (Bifunctional protein GAL10 (Fragment) OS=Candida maltosa GN=GAL10 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 71/149 (47.65%), Postives = 97/149 (65.10%), Query Frame = 3
Query:  174 LVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVY------GWPKVVPCTEEFPLE 602
            LVTGGAGYIGSHTV++L+  G K V+ DNL N+S  AVA+++ +      +  F K+D+R++  L  +F+  K   VIHFA L+AVGES + PL Y+DNN+ GTI LL V  ++  K +VFSSSATVY      G   ++P  E  P+E
Sbjct:    7 LVTGGAGYIGSHTVIELINHGIKVVIADNLSNSSYDAVARIEFIVKQHVSH--FIKVDIRNEKELNQVFSNHKISGVIHFAALKAVGESTKIPLEYYDNNVSGTIALLNVCKSNNVKTIVFSSSATVYGDVTRFGDNSMIPIPEHCPME 153          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.254e-29
Identity = 82/187 (43.85%), Postives = 105/187 (56.15%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTK-FGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHP 725
            ILV GGAGYIGSH V +L+  G  + VVVD+L      AV    +          F++ DL D+  +  +F +     AVIHFA    V ES++KPL YFDNN  G I LLEVM+  G K +VFSS+A  YG P  +P  E  P   +NPYG +KL +E I +   R+    K + LRYFN  GA P
Sbjct:    3 ILVLGGAGYIGSHMVDRLIEKGEEEVVVVDSLVTGHRAAVHPAAK----------FYQGDLADREFMSMVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFGVKYIVFSSTAATYGIPDEIPIKETTPQRPINPYGESKLMMETIMKWSDRAYG-IKFVPLRYFNVAGAKP 178          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_STRTR (UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.248e-29
Identity = 83/188 (44.15%), Postives = 107/188 (56.91%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTK-FGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEW--KIILLRYFNPVGAH 722
            ILV GGAGYIGSH V +L+  G  K VVVD+L      AV            +  F++ DL D+  +  +F +     AVIHFA    VGES++KPL YFDNN  G + LLEVM   G K +VFSS+A  YG P+ +P  E  P   +NPYG +KL +E I +    SD  +  K + LRYFN  GA+
Sbjct:    3 ILVLGGAGYIGSHMVDRLVEKGQEKVVVVDSLVTGHRAAVHP----------DAIFYQGDLSDQDFMRKVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMNECGVKYIVFSSTAATYGIPEEIPILETTPQNPINPYGESKLMMETIMK---WSDQAYGIKYVPLRYFNVAGAN 177          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_CORGL (UDP-glucose 4-epimerase OS=Corynebacterium glutamicum GN=galE PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.977e-27
Identity = 72/185 (38.92%), Postives = 100/185 (54.05%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAV-AKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAH 722
            +LVTGGAGY+GS     LL  G+   ++DN    +  AV A  + + G+  D              +E + ++  F  V+HFA    VGESV+KP  Y+ +N++  +TLL+ M AHG  NLVFSS+A  YG P VVP TE+ P +  N YG TKL I+      + +        LRYFN  GA+
Sbjct:    3 LLVTGGAGYVGSVAAAVLLEHGHDVTIIDNFSTGNREAVPADARLIEGDVND-------------VVEEVLSEGGFEGVVHFAARSLVGESVEKPNEYWHDNVVTALTLLDAMRAHGVNNLVFSSTAATYGEPDVVPITEDMPTQPTNAYGATKLSIDYAITS-YAAAFGLAATSLRYFNVAGAY 173          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: GALE_CORDI (UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae GN=galE PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.784e-27
Identity = 72/184 (39.13%), Postives = 102/184 (55.43%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAH 722
            +LVTGGAGY+GS     LL  G++  +VDNL   +  AV              TF + D++D A  + + +   F AV+HFA    VGESV+KP  Y+ +N++ T+ LL+ M  +  +N+VFSS+A  YG P+ VP TE+ P    NPYG TKL I+        +   +    LRYFN  GA+
Sbjct:    3 LLVTGGAGYVGSVCSTVLLEQGHEVTIVDNLTTGNRDAVPL----------GATFVEGDIKDVA--DNVLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMKRNNVRNIVFSSTAATYGEPETVPITEDAPTHPTNPYGATKLSIDYAITSYAHAYG-FAATSLRYFNVAGAY 173          
BLAST of DR405977 vs. ExPASy Swiss-Prot
Match: EXOB_AZOBR (UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.397e-26
Identity = 71/185 (38.38%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHP 725
            +LVTGGAGYIGSH +  L   G   V +D+L      A+     L             D+     L+ +    +  AV+HFAG   V ESV KPL Y+ NN   ++TLL      G   +VFSS+A VYG P+ VP  E+ P   +NPYG +KL  E++ RD   +    + ++LRYFN  GA P
Sbjct:   11 VLVTGGAGYIGSHVLHALTDAGIPAVTIDDLSAGRREAIPAAVPLVEG----------DIGSAELLDRVMRDHRVDAVMHFAGSIVVPESVVKPLDYYRNNTANSLTLLGACLRAGIDKVVFSSTAAVYGAPESVPIREDAPTVPINPYGASKLMTEQMLRDAGAAHG-LRSVILRYFNVAGADP 184          
The following BLAST results are available for this feature:
BLAST of DR405977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ARAE3_ARATH1.411e-3239.78Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsi... [more]
EXOB_RHILT4.106e-3242.70UDP-glucose 4-epimerase OS=Rhizobium leguminosarum... [more]
GALE_LACHE1.725e-3042.62UDP-glucose 4-epimerase OS=Lactobacillus helveticu... [more]
GALE_KLEPN8.562e-3048.92UDP-glucose 4-epimerase (Fragment) OS=Klebsiella p... [more]
GAL10_CANMA1.907e-2947.65Bifunctional protein GAL10 (Fragment) OS=Candida m... [more]
GALE_STRMU3.254e-2943.85UDP-glucose 4-epimerase OS=Streptococcus mutans GN... [more]
GALE_STRTR7.248e-2944.15UDP-glucose 4-epimerase OS=Streptococcus thermophi... [more]
GALE_CORGL3.977e-2738.92UDP-glucose 4-epimerase OS=Corynebacterium glutami... [more]
GALE_CORDI6.784e-2739.13UDP-glucose 4-epimerase OS=Corynebacterium diphthe... [more]
EXOB_AZOBR4.397e-2638.38UDP-glucose 4-epimerase OS=Azospirillum brasilense... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248F19 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248F19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405977 ID=DR405977; Name=DR405977; organism=Citrus sinensis; type=EST; length=727bp
GGGGGTCAGTTTCATTTTTTTCTTTTCCTTTAAATTTCTCTGAGCGAGGC
CAAGCCCAAGTCTCATCACTTCCTTCGTAATTCCCCCGTTTCTTCAAATT
TTCGTGTACTTTGTGCCCTTTTTTTTGGTTCTTCTGATTGGTCTCTCCGT
TAGACTCCATGGCTAAGAACATTTTGGTGACCGGTGGCGCCGGTTACATT
GGAAGCCACACCGTGCTTCAGTTGCTGTTAGGCGGTTACAAAACTGTCGT
CGTCGACAATCTCGATAATGCCTCGGAAATCGCCGTCGCAAAAGTCAAAG
AACTCGCTGGCAATCAAGGCGACAACATGACCTTTCATAAGTTGGATCTC
CGGGACAAAGCAGCGCTGGAAGCATTGTTTGCCAAAACAAAGTTCGGTGC
TGTCATCCATTTTGCTGGACTGGAAGCAGTTGGTGAAAGTGTGCAGAAAC
CATTGCTGTATTTTGACAACAATCTTATTGGAACCATAACTCTCTTGGAA
GTTATGGCAGCACATGGCTGCAAAAATCTGGTCTTTTCATCATCAGCTAC
TGTTTATGGCTGGCCAAAGGTGGTTCCGTGTACAGAAGAGTTCCCGTTAG
AGGCAATGAACCCTTATGGACGTACCAAGCTTTTCATTGAAGAGATTTGC
CGTGATGTCCACCGCTCAGACTCTGAATGGAAGATCATATTGCTGAGATA
TTTCAATCCTGTTGGTGCACATCCAAG
back to top