DR403425

Overview
NameDR403425
Unique NameDR403425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6092 contig Csv1_Contig6092:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_SYNPW (Protein recA OS=Synechococcus sp. (strain WH7803) GN=recA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.448e-38
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  308 KVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +V    S  GD R  +R +AL+  +  I  +FGK S+ RLG A    VET  +G LTLDLALGGG PKGR+VE++GPESSGKTTL LHAIAEVQ+ GG A  VDAEHA DP Y+ +L
Sbjct:    4 EVKSSQSSGGDVRPGERDQALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASL 120          

HSP 2 Score: 46.2098 bits (108), Expect = 3.448e-38
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL+V   D GEMALEI D++ RS A+D+
Sbjct:  121 GVDIENLLVSQPDTGEMALEIVDQLVRSAAVDI 153          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CYAA5 (Protein recA OS=Cyanothece sp. (strain ATCC 51142) GN=recA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.498e-38
Identity = 69/102 (67.65%), Postives = 79/102 (77.45%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+++AL   +N I  +FGK S+ RLG A    VET  +G LTLDLALGGGLP GR+VEI+GPESSGKTTLALHAIAEVQK GG A  VDAEHA DP+YS AL
Sbjct:    9 DKEKALGLVLNQIERNFGKGSIMRLGDAARMKVETISTGALTLDLALGGGLPMGRVVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSAAL 110          

HSP 2 Score: 41.5874 bits (96), Expect = 4.498e-38
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ NL+V   D GE ALEI D++ RS A+D+
Sbjct:  111 GVDINNLLVAQPDTGESALEIVDQLVRSAAVDV 143          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_SYNS9 (Protein recA OS=Synechococcus sp. (strain CC9902) GN=recA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.854e-38
Identity = 70/119 (58.82%), Postives = 82/119 (68.91%), Query Frame = 2
Query:  302 DGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D K     SD+  S   +R +AL+  +  I  +FGK S+ RLG A    VET  +G LTLDLALGGG PKGR+VEI+GPESSGKTTL LHAIAEVQK GG A  VDAEHA DP Y+ +L
Sbjct:    4 DMKTTAPGSDARSSG--ERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPHYAASL 120          

HSP 2 Score: 47.7506 bits (112), Expect = 5.854e-38
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 3
Query:  642 HIQKHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            H     GVDVENL+V   D GEMALEI D++ RS A+D+
Sbjct:  115 HYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDI 153          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_THEEB (Protein recA OS=Thermosynechococcus elongatus (strain BP-1) GN=recA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.858e-38
Identity = 70/102 (68.63%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL+ A++ I  SFGK S+ RLG A    VET  SG LTLDLALGGGLPKGRI+EI+GPESSGKTTLALHAIAEVQK GG A  VDAEHA DP+Y+ AL
Sbjct:   12 EKRKALEFAISQIERSFGKGSIMRLGDATSMKVETISSGALTLDLALGGGLPKGRIIEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYAAAL 113          

HSP 2 Score: 39.6614 bits (91), Expect = 5.858e-38
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 3
Query:  663 VDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            VD++NL+V   D GE ALEI D++ RS A+D+
Sbjct:  115 VDIQNLLVAQPDTGEAALEIVDQLVRSTAVDI 146          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ANAVT (Protein recA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=recA PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.295e-37
Identity = 67/101 (66.34%), Postives = 79/101 (78.22%), Query Frame = 2
Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +Q+AL   +N I  SFGK ++ RLG A    VET  +G LTLDLALGGGLPKGR++EI+GPESSGKTT+ALHAIAEVQK GG A  VDAEHA DP+Y+ AL
Sbjct:   10 KQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEHALDPTYASAL 110          

HSP 2 Score: 42.743 bits (99), Expect = 1.295e-37
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL+V   D GE ALEI D++ RS A+D+
Sbjct:  111 GVDIQNLLVSQPDTGESALEIVDQLVRSAAVDI 143          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ANASP (Protein recA OS=Anabaena sp. (strain PCC 7120) GN=recA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.295e-37
Identity = 67/101 (66.34%), Postives = 79/101 (78.22%), Query Frame = 2
Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +Q+AL   +N I  SFGK ++ RLG A    VET  +G LTLDLALGGGLPKGR++EI+GPESSGKTT+ALHAIAEVQK GG A  VDAEHA DP+Y+ AL
Sbjct:   10 KQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEHALDPTYASAL 110          

HSP 2 Score: 42.743 bits (99), Expect = 1.295e-37
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL+V   D GE ALEI D++ RS A+D+
Sbjct:  111 GVDIQNLLVSQPDTGESALEIVDQLVRSAAVDI 143          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PROMA (Protein recA OS=Prochlorococcus marinus GN=recA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.686e-37
Identity = 66/112 (58.93%), Postives = 79/112 (70.54%), Query Frame = 2
Query:  323 SSDSGDSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            S    ++R  +R +AL   +  I  +FGK S+ RLG A    VET  +G LTLDLALGGG PKGR+VE++GPESSGKTTL LHAIAEVQK GG A  VDAEHA DP Y+ +L
Sbjct:   14 SCPPNEARSGERDKALSLVLGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASL 125          

HSP 2 Score: 46.9802 bits (110), Expect = 1.686e-37
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL+V   D GEMALEI D++ RS A+DL
Sbjct:  126 GVDIENLLVSQPDTGEMALEIVDQLIRSSAVDL 158          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_SYNSC (Protein recA OS=Synechococcus sp. (strain CC9605) GN=recA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.686e-37
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +R +AL+  +  I  +FGK S+ RLG A    VET  +G LTLDLALGGG PKGR+VEI+GPESSGKTTL LHAIAEVQK GG A  VDAEHA DP Y+ +L
Sbjct:   17 ERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASL 118          

HSP 2 Score: 47.3654 bits (111), Expect = 1.686e-37
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDVENL+V   D GEMALEI D++ RS A+DL
Sbjct:  119 GVDVENLLVSQPDTGEMALEIVDQLVRSAAVDL 151          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PROM5 (Protein recA OS=Prochlorococcus marinus (strain MIT 9515) GN=recA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.197e-37
Identity = 65/110 (59.09%), Postives = 80/110 (72.73%), Query Frame = 2
Query:  329 DSGDSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DS +S   ++ +AL+  +  I  +FG+ S+ RLG A    VET  +G LTLDLALGGG PKGR+VE++GPESSGKTTL LHAIAEVQK GG A  VDAEHA DP Y+ +L
Sbjct:   10 DSKESSSKEKDKALNLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGIAAFVDAEHALDPVYAASL 119          

HSP 2 Score: 46.595 bits (109), Expect = 2.197e-37
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDVENL+V   D GEMALEI D++ RS A+DL
Sbjct:  120 GVDVENLLVSQPDTGEMALEIVDQLIRSTAVDL 152          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_SYNPX (Protein recA OS=Synechococcus sp. (strain WH8102) GN=recA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.861e-37
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +R +AL+  +  I  +FGK S+ RLG A    VET  +G LTLDLALGGG PKGR+VEI+GPESSGKTTL LHAIAEVQK GG A  VDAEHA DP Y+ +L
Sbjct:   19 ERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASL 120          

HSP 2 Score: 46.595 bits (109), Expect = 2.861e-37
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDVENL+V   D GEMALEI D++ RS A+D+
Sbjct:  121 GVDVENLLVSQPDTGEMALEIVDQLVRSAAVDI 153          
The following BLAST results are available for this feature:
BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_SYNPW3.448e-3858.12Protein recA OS=Synechococcus sp. (strain WH7803) ... [more]
RECA_CYAA54.498e-3867.65Protein recA OS=Cyanothece sp. (strain ATCC 51142)... [more]
RECA_SYNS95.854e-3858.82Protein recA OS=Synechococcus sp. (strain CC9902) ... [more]
RECA_THEEB5.858e-3868.63Protein recA OS=Thermosynechococcus elongatus (str... [more]
RECA_ANAVT1.295e-3766.34Protein recA OS=Anabaena variabilis (strain ATCC 2... [more]
RECA_ANASP1.295e-3766.34Protein recA OS=Anabaena sp. (strain PCC 7120) GN=... [more]
RECA_PROMA1.686e-3758.93Protein recA OS=Prochlorococcus marinus GN=recA PE... [more]
RECA_SYNSC1.686e-3763.73Protein recA OS=Synechococcus sp. (strain CC9605) ... [more]
RECA_PROM52.197e-3759.09Protein recA OS=Prochlorococcus marinus (strain MI... [more]
RECA_SYNPX2.861e-3763.73Protein recA OS=Synechococcus sp. (strain WH8102) ... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC
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