DR403425

Overview
NameDR403425
Unique NameDR403425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6092 contig Csv1_Contig6092:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PROM0 (Protein recA OS=Prochlorococcus marinus (strain MIT 9301) GN=recA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.822e-36
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL   +  I  +FG+ S+ RLG A    VET  +G LTLDLALGGG PKGR+VE++GPESSGKTTL LHAIAEVQK GG A  VDAEHA DP Y+ +L
Sbjct:   13 EKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASL 114          

HSP 2 Score: 47.3654 bits (111), Expect = 1.822e-36
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDVENL+V   D GEMALEI D++ RS A+DL
Sbjct:  115 GVDVENLLVSQPDTGEMALEIVDQLIRSSAVDL 147          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_SYNP6 (Protein recA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=recA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.823e-36
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL+  ++ I  +FGK ++ RLG A    VET  +G LTLDLALGGGLPKGRI+E++GPESSGKTTL LHAIAEVQK GG A  VDAEHA DP Y+ ++
Sbjct:   11 EKEKALNLVLSQIERNFGKGAIMRLGDAARLRVETISTGALTLDLALGGGLPKGRIIEVYGPESSGKTTLTLHAIAEVQKQGGIAAFVDAEHALDPVYATSV 112          

HSP 2 Score: 44.669 bits (104), Expect = 1.823e-36
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL++   D GEMALEI D++ RS A+D+
Sbjct:  113 GVDIDNLLISQPDTGEMALEIVDQLVRSAAVDI 145          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_SYNE7 (Protein recA OS=Synechococcus elongatus (strain PCC 7942) GN=recA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.823e-36
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL+  ++ I  +FGK ++ RLG A    VET  +G LTLDLALGGGLPKGRI+E++GPESSGKTTL LHAIAEVQK GG A  VDAEHA DP Y+ ++
Sbjct:   11 EKEKALNLVLSQIERNFGKGAIMRLGDAARLRVETISTGALTLDLALGGGLPKGRIIEVYGPESSGKTTLTLHAIAEVQKQGGIAAFVDAEHALDPVYATSV 112          

HSP 2 Score: 44.669 bits (104), Expect = 1.823e-36
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL++   D GEMALEI D++ RS A+D+
Sbjct:  113 GVDIDNLLISQPDTGEMALEIVDQLVRSAAVDI 145          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_GLOVI (Protein recA OS=Gloeobacter violaceus GN=recA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.373e-36
Identity = 64/109 (58.72%), Postives = 81/109 (74.31%), Query Frame = 2
Query:  332 SGDSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +G +    +Q+AL   +  I  +FG+ ++ RLG      VET PSG +TLDLALGGGLP+GR++EI+GPESSGKTTLALHAIAE+QK GG A  VDAEHA DP+Y+K L
Sbjct:   15 AGTADEAQKQKALKMVLTQIKRNFGEGAIMRLGENTRIRVETVPSGAITLDLALGGGLPRGRVIEIYGPESSGKTTLALHAIAEIQKTGGVAAFVDAEHALDPAYAKVL 123          

HSP 2 Score: 41.5874 bits (96), Expect = 2.373e-36
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV+V++LI+   D GEMA+EI D++ RS AID+
Sbjct:  121 KVLGVNVDDLIISQPDTGEMAMEIVDQLVRSAAIDV 156          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CYAP4 (Protein recA OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=recA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.375e-36
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+AL+  M  I  SFGK S+ RLG A    VET P+G L LDLALGGGLP+GR+VEI+GPESSGKTTLALHAIA VQ+ GG A  VDAEHA DP+Y+  L
Sbjct:   10 EKQKALNLVMTQIERSFGKGSIMRLGDATRMKVETVPTGALPLDLALGGGLPRGRVVEIYGPESSGKTTLALHAIAAVQQTGGIAAFVDAEHALDPAYAAVL 111          

HSP 2 Score: 41.2022 bits (95), Expect = 2.375e-36
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL++   D GE ALEI D++ RS A+D+
Sbjct:  112 GVDIQNLLISQPDTGETALEIVDQLVRSTAVDV 144          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STRAW (Protein recA OS=Streptomyces avermitilis GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.159e-35
Identity = 60/103 (58.25%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++ALDAA+  I   FGK +V RLG      +E  P+G   LD+ALG GGLP+GR+VE++GPESSGKTTL LHA+A  QK GG    VDAEHA DP Y+K L
Sbjct:    5 DREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 107          

HSP 2 Score: 48.1358 bits (113), Expect = 1.159e-35
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD++NLI+   DNGE ALEI D + RSGA+DL
Sbjct:  105 KKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDL 140          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BARBK (Protein recA OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=recA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.512e-35
Identity = 66/105 (62.86%), Postives = 82/105 (78.10%), Query Frame = 2
Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+++ALDAA++ I  SFGK S+ RLG   G + +ET  +G L+LD+ALG GGLPKGRI+EI+GPESSGKTTLALHAIAE QK GG    VDAEHA DP Y++ L
Sbjct:    1 MDKKKALDAALSQIERSFGKGSIMRLGQKEGVVEIETISTGSLSLDIALGVGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKNGGVCAFVDAEHALDPIYARKL 105          

HSP 2 Score: 42.3578 bits (98), Expect = 1.512e-35
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL V   D GE ALEI + + RSGA+D+
Sbjct:  106 GVDLENLFVSQPDTGEQALEITETLVRSGAVDV 138          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_OCHA4 (Protein recA OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=recA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-35
Identity = 65/105 (61.90%), Postives = 80/105 (76.19%), Query Frame = 2
Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+ +ALDAA++ I  +FGK S+ RLG     + +ET P+G L+LD+ALG GGLPKGRIVEI+GPESSGKTTLALH IAE QK GG    VDAEHA DP Y++ L
Sbjct:   14 VDKTKALDAALSQIERAFGKGSIMRLGKNAPVIEIETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKL 118          

HSP 2 Score: 44.669 bits (104), Expect = 1.968e-35
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL++   D GE ALEI D + RSGAID+
Sbjct:  119 GVDLENLLISQPDTGEQALEITDTLVRSGAIDV 151          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ZYMMO (Protein recA OS=Zymomonas mobilis GN=recA PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 2.566e-35
Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 2
Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+Q+AL+AA+  I+ +FGK SV RLGS     ++T  SG L LD+ALG GGLP+GRIVEI+GPESSGKTTLALHAIAE QK GG A  VDAEHA DP Y+K L
Sbjct:    1 MDKQKALEAALAQIDRAFGKGSVMRLGSREKIEIDTISSGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKL 104          

HSP 2 Score: 39.2762 bits (90), Expect = 2.566e-35
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV+ ++LIV   D GE ALEI D + RS A+D+
Sbjct:  102 KKLGVNTDDLIVSQPDTGEQALEITDTLIRSNAVDI 137          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STRLI (Protein recA OS=Streptomyces lividans GN=recA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.338e-35
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++ALDAA+  I   FGK +V R+G      +E  P+G   LD+ALG GG+P+GR+VE++GPESSGKTTL LHA+A  QK GG    VDAEHA DP Y+K L
Sbjct:    5 DREKALDAALAQIERQFGKGAVMRMGDRTNEPIEVIPTGSTALDVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 107          

HSP 2 Score: 48.1358 bits (113), Expect = 3.338e-35
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD++NLI+   DNGE ALEI D + RSGA+DL
Sbjct:  105 KKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDL 140          
The following BLAST results are available for this feature:
BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_PROM01.822e-3660.78Protein recA OS=Prochlorococcus marinus (strain MI... [more]
RECA_SYNP61.823e-3660.78Protein recA OS=Synechococcus sp. (strain ATCC 271... [more]
RECA_SYNE71.823e-3660.78Protein recA OS=Synechococcus elongatus (strain PC... [more]
RECA_GLOVI2.373e-3658.72Protein recA OS=Gloeobacter violaceus GN=recA PE=3... [more]
RECA_CYAP42.375e-3664.71Protein recA OS=Cyanothece sp. (strain PCC 7425 / ... [more]
RECA_STRAW1.159e-3558.25Protein recA OS=Streptomyces avermitilis GN=recA P... [more]
RECA_BARBK1.512e-3562.86Protein recA OS=Bartonella bacilliformis (strain A... [more]
RECA_OCHA41.968e-3561.90Protein recA OS=Ochrobactrum anthropi (strain ATCC... [more]
RECA_ZYMMO2.566e-3565.38Protein recA OS=Zymomonas mobilis GN=recA PE=3 SV=... [more]
RECA_STRLI3.338e-3556.31Protein recA OS=Streptomyces lividans GN=recA PE=3... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC
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