DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STRCO (Protein recA OS=Streptomyces coelicolor GN=recA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.338e-35
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++ALDAA+  I   FGK +V R+G      +E  P+G   LD+ALG GG+P+GR+VE++GPESSGKTTL LHA+A  QK GG    VDAEHA DP Y+K L
Sbjct:    5 DREKALDAALAQIERQFGKGAVMRMGDRTNEPIEVIPTGSTALDVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 107

HSP 2 Score: 48.1358 bits (113), Expect = 3.338e-35
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD++NLI+   DNGE ALEI D + RSGA+DL
Sbjct:  105 KKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDL 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CAUSK (Protein recA OS=Caulobacter sp. (strain K31) GN=recA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.340e-35
Identity = 62/100 (62.00%), Postives = 77/100 (77.00%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYS 649
            D+QRAL+AA+  I+ +FGK SV +LG  G   +E+  +G L LD+ALG GGLPKGR++EI+GPESSGKTTLALH +AE QK GG A  VDAEHA DP Y+
Sbjct:   16 DKQRALEAALAQIDRAFGKGSVMKLGEKGKVEMESISTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLALHVVAECQKAGGTAAFVDAEHALDPGYA 115

HSP 2 Score: 44.2838 bits (103), Expect = 3.340e-35
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++NL+V   DNGE ALEI D + RSGA+D+
Sbjct:  119 GVNLDNLLVSQPDNGEQALEITDTLVRSGAVDI 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BARQU (Protein recA OS=Bartonella quintana GN=recA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.341e-35
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+ +ALDAA++ I  SFGK S+ RLG     + +ET P+G L+LD+ALG GGLPKGRIVEI+GPESSGKTTLALHAIAE QK GG    +DAEHA DP Y++ L
Sbjct:    1 MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVEIETIPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKNGGVCAFIDAEHALDPIYARKL 105

HSP 2 Score: 41.9726 bits (97), Expect = 3.341e-35
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL +   D GE ALEI + + RSGA+D+
Sbjct:  106 GVDLENLFISQPDTGEQALEITETLVRSGAVDV 138

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BART1 (Protein recA OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=recA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.669e-35
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+ +ALDAA++ I  SFGK S+ RLG     + +ET P+G L+LD+ALG GGLPKGRIVEI+GPESSGKTTLALHAIAE QK GG    +DAEHA DP Y++ L
Sbjct:    1 MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVEIETVPTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKGGGICAFIDAEHALDPIYARKL 105

HSP 2 Score: 41.9726 bits (97), Expect = 5.669e-35
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL +   D GE ALEI + + RSGA+D+
Sbjct:  106 GVDLENLFISQPDTGEQALEITETLVRSGAVDV 138

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BARHE (Protein recA OS=Bartonella henselae GN=recA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.669e-35
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+ +ALDAA++ I  SFGK S+ RLG     + +ET P+G L+LD+ALG GGLPKGRIVEI+GPESSGKTTLALHAIAE QK GG    +DAEHA DP Y++ L
Sbjct:    1 MDKIKALDAALSQIERSFGKGSIMRLGQKEQVVEIETIPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKNGGVCAFIDAEHALDPIYARKL 105

HSP 2 Score: 41.9726 bits (97), Expect = 5.669e-35
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL +   D GE ALEI + + RSGA+D+
Sbjct:  106 GVDLENLFISQPDTGEQALEITETLVRSGAVDV 138

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHOVI (Protein recA OS=Rhodopseudomonas viridis GN=recA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 9.617e-35
Identity = 65/105 (61.90%), Postives = 80/105 (76.19%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+ +ALDAA+  I  +FGK S+ RLG +G AL VET  +G L LD+ALG GGLP+GR+VEIFGPESSGKTTLALH +AE QK GG    +DAEHA DP Y++ L
Sbjct:    1 MDKTKALDAALTQIERAFGKGSIMRLGKSGAALEVETISTGSLGLDIALGIGGLPRGRVVEIFGPESSGKTTLALHTVAEAQKKGGVCAFIDAEHALDPLYARKL 105

HSP 2 Score: 40.4318 bits (93), Expect = 9.617e-35
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++++L++   D GE ALEIAD + RSGAID+
Sbjct:  106 GVNLDDLLISQPDAGEQALEIADTLVRSGAIDV 138

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHILO (Protein recA OS=Rhizobium loti GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.252e-34
Identity = 62/109 (56.88%), Postives = 82/109 (75.23%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + + +D+ +ALDAA++ I  +FGK S+ RLG+    + +ET P+G L LD+ALG GGLP+GRI+EI+GPESSGKTTLALH +AE QK GG    VDAEHA DP Y++ L
Sbjct:   10 EDKAVDKSKALDAALSQIERAFGKGSIMRLGANEQVVEIETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKL 118

HSP 2 Score: 44.669 bits (104), Expect = 1.252e-34
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL++   D GE ALEI D + RSGAID+
Sbjct:  119 GVDLENLLISQPDTGEQALEICDTLVRSGAIDV 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_NOCSJ (Protein recA OS=Nocardioides sp. (strain BAA-499 / JS614) GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.253e-34
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++ALDAA+ +I   FGK SV RLG    A +E  PSG + LD+ALG GG P+GR+VEI+GPESSGKTT+ALHA+A  Q+ GG    +DAEHA DP Y+K L
Sbjct:    5 DREKALDAALANIEKQFGKGSVMRLGDEVRAPLEIIPSGSIALDVALGLGGFPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIVAFIDAEHALDPDYAKNL 107

HSP 2 Score: 44.669 bits (104), Expect = 1.253e-34
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GVD + L+V   D+GE ALEIAD + RSGA+DL
Sbjct:  105 KNLGVDTDALLVSQPDSGEQALEIADMLIRSGALDL 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STRVL (Protein recA OS=Streptomyces violaceus GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.630e-34
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++ALDAA+  I   FGK +V R+G      +E   +G   LD+ALG GGLP+GR+VEI+GPESSGKTTL LHA+A  QK GG    VDAEHA DP Y+K L
Sbjct:    5 DREKALDAALAQIERQFGKGAVMRMGDRTQEPIEVISTGSTALDIALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 107

HSP 2 Score: 48.1358 bits (113), Expect = 1.630e-34
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD++NLI+   DNGE ALEI D + RSGA+DL
Sbjct:  105 KKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDL 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STRAM (Protein recA OS=Streptomyces ambofaciens GN=recA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.630e-34
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++ALDAA+  I   FGK +V R+G      +E  P+G   LD+ALG GGLP+GR++E++GPESSGKTTL LHA+A  QK GG    VDAEHA DP Y++ L
Sbjct:    5 DREKALDAALAQIERQFGKGAVMRMGDRSKEPIEVIPTGSTALDVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKL 107

HSP 2 Score: 46.9802 bits (110), Expect = 1.630e-34
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NLI+   DNGE ALEI D + RSGA+DL
Sbjct:  108 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDL 140

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_STRCO	3.338e-35	56.31	Protein recA OS=Streptomyces coelicolor GN=recA PE...	[more]
RECA_CAUSK	3.340e-35	62.00	Protein recA OS=Caulobacter sp. (strain K31) GN=re...	[more]
RECA_BARQU	3.341e-35	62.86	Protein recA OS=Bartonella quintana GN=recA PE=3 S...	[more]
RECA_BART1	5.669e-35	62.86	Protein recA OS=Bartonella tribocorum (strain CIP ...	[more]
RECA_BARHE	5.669e-35	62.86	Protein recA OS=Bartonella henselae GN=recA PE=3 S...	[more]
RECA_RHOVI	9.617e-35	61.90	Protein recA OS=Rhodopseudomonas viridis GN=recA P...	[more]
RECA_RHILO	1.252e-34	56.88	Protein recA OS=Rhizobium loti GN=recA PE=3 SV=1	[more]
RECA_NOCSJ	1.253e-34	59.22	Protein recA OS=Nocardioides sp. (strain BAA-499 /...	[more]
RECA_STRVL	1.630e-34	57.28	Protein recA OS=Streptomyces violaceus GN=recA PE=...	[more]
RECA_STRAM	1.630e-34	55.34	Protein recA OS=Streptomyces ambofaciens GN=recA P...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC