DR403425

Overview
NameDR403425
Unique NameDR403425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6092 contig Csv1_Contig6092:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA1_MYXXA (Protein recA 1 OS=Myxococcus xanthus GN=recA1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.846e-27
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = 2
Query:  341 SRFLDRQRALDAAMNDINSSFGKESVTRLGS-AGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            S+  ++ +A+ AA+  I   FG+ SV  LG  A    V   PSG + +D ALG GG P+GR+VE+FG ESSGKTTL LHAIA+VQ  GG A  +DAEHA D SY++ L
Sbjct:    2 SKLAEKLKAVAAAVASIEKQFGRGSVMTLGGEAREQKVAVIPSGSVGVDRALGVGGYPRGRVVEVFGNESSGKTTLTLHAIAQVQAAGGVAAFIDAEHALDVSYARKL 109          

HSP 2 Score: 40.4318 bits (93), Expect = 7.846e-27
Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV VE L+V   D GE ALEI + + RSGA+DL
Sbjct:  110 GVRVEELLVSQPDTGEQALEITEHLVRSGAVDL 142          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BORPE (Protein recA OS=Bordetella pertussis GN=recA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.931e-26
Identity = 53/104 (50.96%), Postives = 70/104 (67.31%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA++ I   FGK S+ R G       ++   +G L LD+ALG GGLP+GR++E++GPESSGKTTL L  IAE+QKLGG    VDAEHA D  Y+  L
Sbjct:   12 EKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGKTTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKL 115          

HSP 2 Score: 38.1206 bits (87), Expect = 2.931e-26
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++ +L++   D GE ALEI D + RSG++DL
Sbjct:  116 GVNLTDLLISQPDTGEQALEITDALVRSGSVDL 148          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BORPA (Protein recA OS=Bordetella parapertussis GN=recA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.931e-26
Identity = 53/104 (50.96%), Postives = 70/104 (67.31%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA++ I   FGK S+ R G       ++   +G L LD+ALG GGLP+GR++E++GPESSGKTTL L  IAE+QKLGG    VDAEHA D  Y+  L
Sbjct:   12 EKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGKTTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKL 115          

HSP 2 Score: 38.1206 bits (87), Expect = 2.931e-26
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++ +L++   D GE ALEI D + RSG++DL
Sbjct:  116 GVNLTDLLISQPDTGEQALEITDALVRSGSVDL 148          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BORBR (Protein recA OS=Bordetella bronchiseptica GN=recA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.931e-26
Identity = 53/104 (50.96%), Postives = 70/104 (67.31%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA++ I   FGK S+ R G       ++   +G L LD+ALG GGLP+GR++E++GPESSGKTTL L  IAE+QKLGG    VDAEHA D  Y+  L
Sbjct:   12 EKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGKTTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKL 115          

HSP 2 Score: 38.1206 bits (87), Expect = 2.931e-26
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++ +L++   D GE ALEI D + RSG++DL
Sbjct:  116 GVNLTDLLISQPDTGEQALEITDALVRSGSVDL 148          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BORPD (Protein recA OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=recA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.963e-26
Identity = 53/104 (50.96%), Postives = 70/104 (67.31%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA++ I   FGK S+ R G       ++   +G L LD+ALG GGLP+GR++EI+GPESSGKTTL L  IAE+QK+GG    VDAEHA D  Y+  L
Sbjct:   12 EKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKIGGTCAFVDAEHALDVQYAAKL 115          

HSP 2 Score: 38.1206 bits (87), Expect = 4.963e-26
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++ +L++   D GE ALEI D + RSG++DL
Sbjct:  116 GVNLTDLLISQPDTGEQALEITDALVRSGSVDL 148          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BORA1 (Protein recA OS=Bordetella avium (strain 197N) GN=recA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.965e-26
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA++ I   FGK S+ R G       ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  IAE+QK+GG    VDAEHA D  Y+  L
Sbjct:   11 EKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKVGGTCAFVDAEHALDVQYASKL 114          

HSP 2 Score: 37.7354 bits (86), Expect = 4.965e-26
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++ +L++   D GE ALEI D + RSG++DL
Sbjct:  115 GVNLGDLLISQPDTGEQALEITDALVRSGSVDL 147          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LEGPL (Protein recA OS=Legionella pneumophila (strain Lens) GN=recA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.121e-25
Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLG-SAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+AL AA++ I   FGK SV R+G S     +E   +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK+GG A  +DAEHA DPSY++ L
Sbjct:    4 NKQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKL 107          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LEGPH (Protein recA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=recA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.121e-25
Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLG-SAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+AL AA++ I   FGK SV R+G S     +E   +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK+GG A  +DAEHA DPSY++ L
Sbjct:    4 NKQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKL 107          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LEGPC (Protein recA OS=Legionella pneumophila (strain Corby) GN=recA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.121e-25
Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLG-SAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+AL AA++ I   FGK SV R+G S     +E   +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK+GG A  +DAEHA DPSY++ L
Sbjct:    4 NKQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKL 107          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LEGPA (Protein recA OS=Legionella pneumophila (strain Paris) GN=recA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.121e-25
Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLG-SAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+AL AA++ I   FGK SV R+G S     +E   +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK+GG A  +DAEHA DPSY++ L
Sbjct:    4 NKQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKL 107          
The following BLAST results are available for this feature:
BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA1_MYXXA7.846e-2751.85Protein recA 1 OS=Myxococcus xanthus GN=recA1 PE=3... [more]
RECA_BORPE2.931e-2650.96Protein recA OS=Bordetella pertussis GN=recA PE=3 ... [more]
RECA_BORPA2.931e-2650.96Protein recA OS=Bordetella parapertussis GN=recA P... [more]
RECA_BORBR2.931e-2650.96Protein recA OS=Bordetella bronchiseptica GN=recA ... [more]
RECA_BORPD4.963e-2650.96Protein recA OS=Bordetella petrii (strain ATCC BAA... [more]
RECA_BORA14.965e-2651.92Protein recA OS=Bordetella avium (strain 197N) GN=... [more]
RECA_LEGPL1.121e-2559.62Protein recA OS=Legionella pneumophila (strain Len... [more]
RECA_LEGPH1.121e-2559.62Protein recA OS=Legionella pneumophila subsp. pneu... [more]
RECA_LEGPC1.121e-2559.62Protein recA OS=Legionella pneumophila (strain Cor... [more]
RECA_LEGPA1.121e-2559.62Protein recA OS=Legionella pneumophila (strain Par... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC
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