DR403425

Overview
NameDR403425
Unique NameDR403425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6092 contig Csv1_Contig6092:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RUBXD (Protein recA OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.697e-34
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 2
Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            LD+ +ALD A++ I   FGK S+ R+G      V +  +G L LDLALG GG+P+GRIVEIFGPESSGKTTLALH IAE Q+ GG A  +DAEHA DP+Y++A+
Sbjct:    3 LDKSKALDTAVSQIERQFGKGSIMRMGDRASQKVASISTGSLALDLALGVGGVPRGRIVEIFGPESSGKTTLALHIIAEAQRAGGLAAFIDAEHALDPTYAEAI 106          

HSP 2 Score: 42.743 bits (99), Expect = 4.697e-34
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAID 755
            GVD+ENL     D+GE ALEIAD + RSGA+D
Sbjct:  107 GVDLENLYFSQPDSGEQALEIADTLVRSGALD 138          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_AZOLI (Protein recA OS=Azospirillum lipoferum GN=recA PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.110e-34
Identity = 64/105 (60.95%), Postives = 80/105 (76.19%), Query Frame = 2
Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+Q+ALDAA++ I  +FGK S+ +LG+    +  E   +G L LD+ALG GGLPKGRIVEI+GPESSGKTTLALHAIA+ QK GG    VDAEHA DPSY++ L
Sbjct:   14 MDKQKALDAALSQIERAFGKGSIMKLGARENLVETEVISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAQAQKAGGTCAFVDAEHALDPSYARKL 118          

HSP 2 Score: 40.817 bits (94), Expect = 6.110e-34
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE ALEIAD + RSGAID+
Sbjct:  119 GVNIDELLISQPDAGEQALEIADTLVRSGAIDV 151          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CLOAB (Protein recA OS=Clostridium acetobutylicum GN=recA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.115e-34
Identity = 56/103 (54.37%), Postives = 78/103 (75.73%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +A+DAAM+ I   FGK ++ +LG      ++   +GCL+LD+ALG GG+P+GR+VEI+GPESSGKTT+ALH +AE QK GG A  +DAEHA DP Y++AL
Sbjct:    4 EKLKAIDAAMSQIEKQFGKGAIMKLGEQDILNIDAISTGCLSLDIALGIGGVPRGRVVEIYGPESSGKTTVALHILAEAQKKGGAAAFIDAEHALDPQYARAL 106          

HSP 2 Score: 45.0542 bits (105), Expect = 6.115e-34
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL+V   D GE ALEIA+ + RSGAID+
Sbjct:  107 GVDIDNLVVSQPDTGEQALEIAEALVRSGAIDV 139          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LEIXX (Protein recA OS=Leifsonia xyli subsp. xyli GN=recA PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 7.962e-34
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL  A+  I+  FGK SV RLGS   A VE  P+G + LD+ALG GGLP+GRIVEI+GPESSGKTTL LHAIA  Q+ GG A  +DAEHA DP Y++ L
Sbjct:    6 DREKALVTALAQIDRQFGKGSVMRLGSDERAPVEVVPTGSIALDVALGIGGLPRGRIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYARKL 108          

HSP 2 Score: 43.1282 bits (100), Expect = 7.962e-34
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++ L+V   D GE ALEIAD + RSG+IDL
Sbjct:  109 GVDIDALLVSQPDTGEQALEIADMLVRSGSIDL 141          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_EXISA (Protein recA OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=recA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.965e-34
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ A+  I   FGK S+ RLG      V   PSG + LD+ALG GG P+GR++E++GPESSGKTT+ALHAIAEVQK GG A  VDAEHA DP Y+K L
Sbjct:    3 DRKQALEMALRQIEKQFGKGSIMRLGENTDQQVSVIPSGSIALDVALGAGGYPRGRVIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAKNL 105          

HSP 2 Score: 41.2022 bits (95), Expect = 7.965e-34
Identity = 17/36 (47.22%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  103 KNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 138          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_KINRD (Protein recA OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=recA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.965e-34
Identity = 61/103 (59.22%), Postives = 78/103 (75.73%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++ALDAA+  I+ +FGK SV RLG      +E  P+G ++LD+ALG GGLP+GR+VEI+GPESSGKTT+ALHA+A  QK GG A  +DAEHA DP Y+  L
Sbjct:    6 DREKALDAALAAIDKNFGKGSVMRLGDEVRPPIEVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQKAGGIAAFIDAEHALDPDYAAKL 108          

HSP 2 Score: 41.5874 bits (96), Expect = 7.965e-34
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD + L+V   D GE ALEIAD + RSGA+D+
Sbjct:  109 GVDTDALLVSQPDTGEQALEIADMLIRSGALDI 141          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CLONN (Protein recA OS=Clostridium novyi (strain NT) GN=recA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.965e-34
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA+  I   FGK SV +LG      VE   +G L+LD+ALG GG+P+GRI+EIFGPESSGKTT+ALH IAE QK GG A  +DAEHA DP Y+KAL
Sbjct:    4 EKMKALQAAITQIEKQFGKGSVMKLGEEHVLNVEAISTGSLSLDIALGIGGIPRGRIIEIFGPESSGKTTVALHIIAEAQKSGGTAAFIDAEHALDPVYAKAL 106          

HSP 2 Score: 44.669 bits (104), Expect = 7.965e-34
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD++NLIV   D GE ALEI + + RSGAID+
Sbjct:  104 KALGVDIDNLIVSQPDTGEQALEICEALVRSGAIDV 139          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_FRAAA (Protein recA OS=Frankia alni (strain ACN14a) GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.966e-34
Identity = 59/104 (56.73%), Postives = 75/104 (72.12%), Query Frame = 2
Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            LDR +ALD A+  I+ +FGK SV RLG      ++  P+G + LD+ALG GGLPKGR++EI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+  L
Sbjct:    5 LDRDKALDNALAQIDKAFGKGSVMRLGDDTRPPIQAIPTGSIALDVALGIGGLPKGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKL 108          

HSP 2 Score: 45.8246 bits (107), Expect = 7.966e-34
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL+V   D GE ALEIAD + RSGA+D+
Sbjct:  109 GVDIDNLLVSQPDTGEQALEIADMLVRSGALDI 141          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAHJ (Protein recA OS=Staphylococcus haemolyticus (strain JCSC1435) GN=recA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.037e-33
Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V +  SG +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQK GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEAL 106          

HSP 2 Score: 40.4318 bits (93), Expect = 1.037e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_OCEIH (Protein recA OS=Oceanobacillus iheyensis GN=recA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.038e-33
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++ALD A+  I   FGK S+ ++G      + T PSG L LD+ALG GG P+GR+VEI+GPESSGKTT+ALHAIAE QK GG A  +DAEHA DP Y+KAL
Sbjct:    3 DRKQALDMALRQIEKQFGKGSIMKMGENEIPKIATIPSGSLALDVALGIGGYPRGRVVEIYGPESSGKTTVALHAIAEAQKQGGQAAFIDAEHALDPVYAKAL 105          

HSP 2 Score: 40.0466 bits (92), Expect = 1.038e-33
Identity = 17/36 (47.22%), Postives = 26/36 (72.22%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  103 KALGVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 138          
The following BLAST results are available for this feature:
BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_RUBXD4.697e-3458.65Protein recA OS=Rubrobacter xylanophilus (strain D... [more]
RECA_AZOLI6.110e-3460.95Protein recA OS=Azospirillum lipoferum GN=recA PE=... [more]
RECA_CLOAB6.115e-3454.37Protein recA OS=Clostridium acetobutylicum GN=recA... [more]
RECA_LEIXX7.962e-3461.17Protein recA OS=Leifsonia xyli subsp. xyli GN=recA... [more]
RECA_EXISA7.965e-3459.22Protein recA OS=Exiguobacterium sp. (strain ATCC B... [more]
RECA_KINRD7.965e-3459.22Protein recA OS=Kineococcus radiotolerans (strain ... [more]
RECA_CLONN7.965e-3459.22Protein recA OS=Clostridium novyi (strain NT) GN=r... [more]
RECA_FRAAA7.966e-3456.73Protein recA OS=Frankia alni (strain ACN14a) GN=re... [more]
RECA_STAHJ1.037e-3362.14Protein recA OS=Staphylococcus haemolyticus (strai... [more]
RECA_OCEIH1.038e-3360.19Protein recA OS=Oceanobacillus iheyensis GN=recA P... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC
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