DR403425

Overview
NameDR403425
Unique NameDR403425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6092 contig Csv1_Contig6092:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ACICJ (Protein recA OS=Acidiphilium cryptum (strain JF-5) GN=recA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.038e-33
Identity = 59/105 (56.19%), Postives = 78/105 (74.29%), Query Frame = 2 
Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGA-LVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++ +ALDAA+  I  +FGK S+ R+GS   +  ++   +G L LDLALG GGLP+GR++EI+GPESSGKTTLALHA+AE QK GG    VDAEHA DP Y++ L
Sbjct:    1 MEKNKALDAALAQIERAFGKGSIMRMGSRSESEAIDVISTGSLGLDLALGIGGLPRGRVIEIYGPESSGKTTLALHAVAEAQKRGGTCAFVDAEHALDPIYARKL 105

HSP 2 Score: 46.2098 bits (108), Expect = 1.038e-33
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDV+NL++   D GE ALEIAD + RSGAID+
Sbjct:  106 GVDVDNLLISQPDTGEQALEIADTLVRSGAIDV 138
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CORA7 (Protein recA OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=recA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.350e-33
Identity = 64/118 (54.24%), Postives = 79/118 (66.95%), Query Frame = 2 
Query:  308 KVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            K    +++ GD    DRQ+ALDAAM  I   FGK +V RLG      ++   SG   +D+ALG GG P+GRIVEI+GPESSGKTT+ALHAIA  QK GG A  +DAEHA DP Y++ L
Sbjct:    4 KKKSSAANKGD----DRQKALDAAMAMIEKDFGKGAVMRLGDDDRPPIQAISSGNTAIDIALGVGGFPRGRIVEIYGPESSGKTTVALHAIASAQKTGGIAAFIDAEHALDPEYARLL 117

HSP 2 Score: 45.4394 bits (106), Expect = 1.350e-33
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD +NL+V   D GE ALEIAD + RSGAID+
Sbjct:  118 GVDTDNLLVSQPDTGEQALEIADMLVRSGAIDI 150
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MACCJ (Protein recA OS=Macrococcus caseolyticus (strain JCSC5402) GN=recA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.351e-33
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +RQ+ALD  + ++  SFGK +V +LG      V T  SG +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ+ GG A  +DAEHA DP Y+K L
Sbjct:    3 ERQKALDTVIKNMEKSFGKGAVMKLGDRTDRNVSTVSSGSITLDSALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQRQGGVAAFIDAEHALDPVYAKNL 105

HSP 2 Score: 43.5134 bits (101), Expect = 1.351e-33
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GVD+ENL +   D+GE  LEIA+   RSGA+D+
Sbjct:  103 KNLGVDIENLYLSQPDHGEQGLEIAEAFVRSGAVDI 138
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LISWE (Protein recA OS=Listeria welshimeri GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.351e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T  SG L LD+ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP+Y+K L
Sbjct:    3 DRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNL 105

HSP 2 Score: 41.2022 bits (95), Expect = 1.351e-33
Identity = 17/36 (47.22%), Postives = 27/36 (75.00%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  103 KNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDM 138
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LISW6 (Protein recA OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.351e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T  SG L LD+ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP+Y+K L
Sbjct:    3 DRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNL 105

HSP 2 Score: 41.2022 bits (95), Expect = 1.351e-33
Identity = 17/36 (47.22%), Postives = 27/36 (75.00%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  103 KNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDM 138
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LISSE (Protein recA OS=Listeria seeligeri GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.351e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T  SG L LD+ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP+Y+K L
Sbjct:    3 DRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNL 105

HSP 2 Score: 41.2022 bits (95), Expect = 1.351e-33
Identity = 17/36 (47.22%), Postives = 27/36 (75.00%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  103 KNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDM 138
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LISMO (Protein recA OS=Listeria monocytogenes GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.351e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T  SG L LD+ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP+Y+K L
Sbjct:    3 DRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNL 105

HSP 2 Score: 41.2022 bits (95), Expect = 1.351e-33
Identity = 17/36 (47.22%), Postives = 27/36 (75.00%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  103 KNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDM 138
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LISMH (Protein recA OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.351e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T  SG L LD+ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP+Y+K L
Sbjct:    3 DRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNL 105

HSP 2 Score: 41.2022 bits (95), Expect = 1.351e-33
Identity = 17/36 (47.22%), Postives = 27/36 (75.00%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  103 KNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDM 138
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LISMF (Protein recA OS=Listeria monocytogenes serotype 4b (strain F2365) GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.351e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T  SG L LD+ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP+Y+K L
Sbjct:    3 DRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNL 105

HSP 2 Score: 41.2022 bits (95), Expect = 1.351e-33
Identity = 17/36 (47.22%), Postives = 27/36 (75.00%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  103 KNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDM 138
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LISMC (Protein recA OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.351e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T  SG L LD+ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP+Y+K L
Sbjct:    3 DRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNL 105

HSP 2 Score: 41.2022 bits (95), Expect = 1.351e-33
Identity = 17/36 (47.22%), Postives = 27/36 (75.00%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  103 KNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDM 138
The following BLAST results are available for this feature:
BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_ACICJ1.038e-3356.19Protein recA OS=Acidiphilium cryptum (strain JF-5)... [more]
RECA_CORA71.350e-3354.24Protein recA OS=Corynebacterium aurimucosum (strai... [more]
RECA_MACCJ1.351e-3360.19Protein recA OS=Macrococcus caseolyticus (strain J... [more]
RECA_LISWE1.351e-3359.22Protein recA OS=Listeria welshimeri GN=recA PE=3 S... [more]
RECA_LISW61.351e-3359.22Protein recA OS=Listeria welshimeri serovar 6b (st... [more]
RECA_LISSE1.351e-3359.22Protein recA OS=Listeria seeligeri GN=recA PE=3 SV... [more]
RECA_LISMO1.351e-3359.22Protein recA OS=Listeria monocytogenes GN=recA PE=... [more]
RECA_LISMH1.351e-3359.22Protein recA OS=Listeria monocytogenes serotype 4a... [more]
RECA_LISMF1.351e-3359.22Protein recA OS=Listeria monocytogenes serotype 4b... [more]
RECA_LISMC1.351e-3359.22Protein recA OS=Listeria monocytogenes serotype 4b... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC
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