DR403425

Overview
NameDR403425
Unique NameDR403425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6092 contig Csv1_Contig6092:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LISIV (Protein recA OS=Listeria ivanovii GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.351e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T  SG L LD+ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP+Y+K L
Sbjct:    3 DRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNL 105          

HSP 2 Score: 41.2022 bits (95), Expect = 1.351e-33
Identity = 17/36 (47.22%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  103 KNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDM 138          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LISIN (Protein recA OS=Listeria innocua GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.351e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T  SG L LD+ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP+Y+K L
Sbjct:    3 DRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNL 105          

HSP 2 Score: 41.2022 bits (95), Expect = 1.351e-33
Identity = 17/36 (47.22%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  103 KNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDM 138          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHOPA (Protein recA OS=Rhodopseudomonas palustris GN=recA PE=3 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 1.351e-33
Identity = 64/105 (60.95%), Postives = 77/105 (73.33%), Query Frame = 2
Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+ +AL AA++ I   FGK SV RLG    ++ +ET  SG L LD+ALG GGLPKGRIVEI+GPESSGKTTLALH +AE QK GG    VDAEHA DP Y++ L
Sbjct:    1 MDKSKALSAALSQIERQFGKGSVMRLGKNDRSMDIETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEHALDPVYARKL 105          

HSP 2 Score: 43.1282 bits (100), Expect = 1.351e-33
Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L++   D+GE ALEIAD + RSGAID+ +
Sbjct:  106 GVNVDDLLISQPDHGEQALEIADTLVRSGAIDVLI 140          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_HELMI (Protein recA OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=recA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.351e-33
Identity = 60/104 (57.69%), Postives = 78/104 (75.00%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL  A+N I  +FGK S+ RLG A   L VE  P+G + LD+ALG GG+P+GRIVE++GPESSGKTT+ALH IAE QK+GG A  +DAEHA DP Y++ L
Sbjct:    6 NKLQALQQALNSIEKAFGKGSIMRLGEASAKLLVEVIPTGSIALDMALGIGGVPRGRIVEVYGPESSGKTTVALHIIAEAQKMGGMAAFIDAEHALDPVYARNL 109          

HSP 2 Score: 43.8986 bits (102), Expect = 1.351e-33
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            ++ GVD++NL+V   D GE ALEI + + RSGAID+
Sbjct:  107 RNLGVDIDNLLVSQPDTGEQALEICEALVRSGAIDV 142          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CORU7 (Protein recA OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=recA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.758e-33
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR +ALD AM  I   FGK ++ RLG      +   PSG + +++ALG GG P+GR+VEI+GPESSGKTT+ALHAIAE QK GG A  +DAEHA DP Y+KAL
Sbjct:   14 DRSKALDLAMAQIEKDFGKGAIMRLGDENRPPISAIPSGNIAINVALGIGGFPRGRVVEIYGPESSGKTTVALHAIAEAQKGGGIAAFIDAEHALDPEYAKAL 116          

HSP 2 Score: 43.1282 bits (100), Expect = 1.758e-33
Identity = 21/36 (58.33%), Postives = 25/36 (69.44%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD + L+V   D GE ALEIAD + RSGAID+
Sbjct:  114 KALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDM 149          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_AGRRK (Protein recA OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=recA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.759e-33
Identity = 63/109 (57.80%), Postives = 81/109 (74.31%), Query Frame = 2
Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + + +D+ +AL+AA++ I  SFGK S+ +LGS    + +ET  +G L+LD+ALG GGLPKGRIVEI+GPESSGKTTLAL  IAE QK GG    VDAEHA DP Y++ L
Sbjct:   10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVEIETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKL 118          

HSP 2 Score: 43.5134 bits (101), Expect = 1.759e-33
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL++   D GE ALEI D + RSGAID+
Sbjct:  119 GVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 151          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHISN (Protein recA OS=Rhizobium sp. (strain NGR234) GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.759e-33
Identity = 62/109 (56.88%), Postives = 80/109 (73.39%), Query Frame = 2
Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + + +D+ +AL+AA++ I  SFGK S+ +LGS    + +ET  +G L LD+ALG GGLPKGRI+EI+GPESSGKTTLAL  IAE QK GG    VDAEHA DP Y++ L
Sbjct:   10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSKDSVIEIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKL 118          

HSP 2 Score: 44.669 bits (104), Expect = 1.759e-33
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL++   D GE ALEI D + RSGAID+
Sbjct:  119 GVDLENLLISQPDTGEQALEITDTLVRSGAIDV 151          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BACSU (Protein recA OS=Bacillus subtilis GN=recA PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.760e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T PSG L LD ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ+ GG A  +DAEHA DP Y++ L
Sbjct:    3 DRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKL 105          

HSP 2 Score: 40.4318 bits (93), Expect = 1.760e-33
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++E L++   D GE ALEIA+ + RSGA+D+
Sbjct:  106 GVNIEELLLSQPDTGEQALEIAEALVRSGAVDI 138          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BACA2 (Protein recA OS=Bacillus amyloliquefaciens (strain FZB42) GN=recA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.760e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T PSG L LD ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ+ GG A  +DAEHA DP Y++ L
Sbjct:    3 DRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAEVQEKGGQAAFIDAEHALDPVYAQKL 105          

HSP 2 Score: 40.4318 bits (93), Expect = 1.760e-33
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++E L++   D GE ALEIA+ + RSGA+D+
Sbjct:  106 GVNIEELLLSQPDTGEQALEIAEALVRSGAVDI 138          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LACBA (Protein recA OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=recA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.289e-33
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +RQ ALD A+  I   FGK S+ RLG      VET PSG L LD+ALG GG P+GRIVEI+GPESSGKTT+ALHA+AEVQK GG A  +DAE+A DP+Y+ AL
Sbjct:    4 ERQAALDKALKKIEKDFGKGSIMRLGDNSNLEVETVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATAL 106          

HSP 2 Score: 36.5798 bits (83), Expect = 2.289e-33
Identity = 15/33 (45.45%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++++L++   D GE  L+IAD +  SGAID+
Sbjct:  107 GVNIDDLLLSQPDTGEQGLQIADALISSGAIDI 139          
The following BLAST results are available for this feature:
BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_LISIV1.351e-3359.22Protein recA OS=Listeria ivanovii GN=recA PE=3 SV=... [more]
RECA_LISIN1.351e-3359.22Protein recA OS=Listeria innocua GN=recA PE=3 SV=1[more]
RECA_RHOPA1.351e-3360.95Protein recA OS=Rhodopseudomonas palustris GN=recA... [more]
RECA_HELMI1.351e-3357.69Protein recA OS=Heliobacterium modesticaldum (stra... [more]
RECA_CORU71.758e-3358.25Protein recA OS=Corynebacterium urealyticum (strai... [more]
RECA_AGRRK1.759e-3357.80Protein recA OS=Agrobacterium radiobacter (strain ... [more]
RECA_RHISN1.759e-3356.88Protein recA OS=Rhizobium sp. (strain NGR234) GN=r... [more]
RECA_BACSU1.760e-3359.22Protein recA OS=Bacillus subtilis GN=recA PE=1 SV=... [more]
RECA_BACA21.760e-3359.22Protein recA OS=Bacillus amyloliquefaciens (strain... [more]
RECA_LACBA2.289e-3363.11Protein recA OS=Lactobacillus brevis (strain ATCC ... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC
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