DR403235

Overview
NameDR403235
Unique NameDR403235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403235_ssr11 microsatellite DR403235_ssr11:11..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2998 contig Csv1_Contig2998:1061..1449. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_PHYIN (Autophagy-related protein 8 OS=Phytophthora infestans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.021e-36
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIF+ N+LPPTAA+MS IYEE K
Sbjct:   45 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPTAALMSNIYEEQK 98          

HSP 2 Score: 78.9518 bits (193), Expect = 1.021e-36
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 3
Query:   99 SSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            SSFK EHP E+RQAE+ RIR KYPDRIPVI EKA+RSDIPDIDKK
Sbjct:    2 SSFKKEHPFEKRQAEAQRIRSKYPDRIPVICEKADRSDIPDIDKK 46          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8B_ARATH (Autophagy-related protein 8b OS=Arabidopsis thaliana GN=ATG8B PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.322e-36
Identity = 47/54 (87.04%), Postives = 52/54 (96.30%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLT+GQFVYVVRKRIKL AEKAIF+FVKN LPPTAA+MSAIYEE+K
Sbjct:   47 KKKYLVPADLTIGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHK 100          

HSP 2 Score: 75.0998 bits (183), Expect = 1.322e-36
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 3
Query:   90 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            M K+SFKL +PLE R AES RIR KYP+R+PVIVEKA +SD+PDIDKK
Sbjct:    1 MEKNSFKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKK 48          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8G_ARATH (Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.010e-34
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRI+LSAEKAIFIFV N+LPPT AMMS IY+ENK
Sbjct:   47 KKKYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENK 100          

HSP 2 Score: 69.3218 bits (168), Expect = 2.010e-34
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 3
Query:   90 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            M+  SF+ +H  E+R+AE+ RIREKY DR+PVIVEK+E+SDIP+IDKK
Sbjct:    1 MSNVSFRQDHDFEKRKAEALRIREKYSDRVPVIVEKSEKSDIPNIDKK 48          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_LACBI (Autophagy-related protein 8 OS=Laccaria bicolor GN=ATG8 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.571e-34
Identity = 44/54 (81.48%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVP+DLTVGQFVYV+RKRIKL+ EKAIFIFV  +LPPTAA+MSAIYEE+K
Sbjct:   46 KKKYLVPSDLTVGQFVYVIRKRIKLAPEKAIFIFVDEVLPPTAALMSAIYEEHK 99          

HSP 2 Score: 72.7886 bits (177), Expect = 2.571e-34
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KYPDRIPVI EKA+R+DIP IDKK
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYPDRIPVICEKADRTDIPTIDKK 47          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_CRYNE (Autophagy-related protein 8 OS=Cryptococcus neoformans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.506e-34
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKL+ EKAIFIFV +ILPPTAA+MS+IY+E+K
Sbjct:   47 KKKYLVPADLTVGQFVYVIRKRIKLAPEKAIFIFVDDILPPTAALMSSIYDEHK 100          

HSP 2 Score: 71.633 bits (174), Expect = 7.506e-34
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 3
Query:   90 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            M +S FK EHP ++R+AE+ RIR+KY DRIPVI EKAE+SDIP IDKK
Sbjct:    1 MVRSKFKDEHPFDKRKAEAERIRQKYQDRIPVICEKAEKSDIPTIDKK 48          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_YARLI (Autophagy-related protein 8 OS=Yarrowia lipolytica GN=ATG8 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.672e-33
Identity = 44/54 (81.48%), Postives = 53/54 (98.15%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS+E+AIFIFV ++LPPTAA+MS+IYEE+K
Sbjct:   46 KKKYLVPADLTVGQFVYVIRKRIKLSSERAIFIFVDDVLPPTAALMSSIYEEHK 99          

HSP 2 Score: 67.781 bits (164), Expect = 3.672e-33
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KY DR+PVI EK E+SDIP IDKK
Sbjct:    2 RSKFKDEHPFEKRRAEAERIRKKYDDRVPVICEKVEKSDIPVIDKK 47          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8E_ARATH (Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.244e-33
Identity = 42/54 (77.78%), Postives = 50/54 (92.59%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVP+DLTVGQFVYV+RKRIKLSAEKAIFIFV N+LPPT  +MS++YE+ K
Sbjct:   48 KKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKK 101          

HSP 2 Score: 69.3218 bits (168), Expect = 6.244e-33
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 3
Query:   99 SSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            S FK++   E+R+AE+ RIREKYPDRIPVIVEKAE+S++P+IDKK
Sbjct:    5 SIFKMDDDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKK 49          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_PODAN (Autophagy-related protein 8 OS=Podospora anserina GN=ATG8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.059e-32
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+K
Sbjct:   46 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHK 99          

HSP 2 Score: 66.2402 bits (160), Expect = 1.059e-32
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KY DRIPVI EK E+SDI  IDKK
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKK 47          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_NEUCR (Autophagy-related protein 8 OS=Neurospora crassa GN=atg-8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.059e-32
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+K
Sbjct:   46 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHK 99          

HSP 2 Score: 66.2402 bits (160), Expect = 1.059e-32
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KY DRIPVI EK E+SDI  IDKK
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYSDRIPVICEKVEKSDIATIDKK 47          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_COLLN (Autophagy-related protein 8 OS=Colletotrichum lindemuthianum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.059e-32
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+K
Sbjct:   46 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHK 99          

HSP 2 Score: 66.2402 bits (160), Expect = 1.059e-32
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KY DRIPVI EK E+SDI  IDKK
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYSDRIPVICEKVEKSDIATIDKK 47          
The following BLAST results are available for this feature:
BLAST of DR403235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ATG8_PHYIN1.021e-3683.33Autophagy-related protein 8 OS=Phytophthora infest... [more]
ATG8B_ARATH1.322e-3687.04Autophagy-related protein 8b OS=Arabidopsis thalia... [more]
ATG8G_ARATH2.010e-3485.19Autophagy-related protein 8g OS=Arabidopsis thalia... [more]
ATG8_LACBI2.571e-3481.48Autophagy-related protein 8 OS=Laccaria bicolor GN... [more]
ATG8_CRYNE7.506e-3481.48Autophagy-related protein 8 OS=Cryptococcus neofor... [more]
ATG8_YARLI3.672e-3381.48Autophagy-related protein 8 OS=Yarrowia lipolytica... [more]
ATG8E_ARATH6.244e-3377.78Autophagy-related protein 8e OS=Arabidopsis thalia... [more]
ATG8_PODAN1.059e-3283.33Autophagy-related protein 8 OS=Podospora anserina ... [more]
ATG8_NEUCR1.059e-3283.33Autophagy-related protein 8 OS=Neurospora crassa G... [more]
ATG8_COLLN1.059e-3283.33Autophagy-related protein 8 OS=Colletotrichum lind... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244E11 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403235 ID=DR403235; Name=DR403235; organism=Citrus sinensis; type=EST; length=388bp
GGGGAGTCTTTTTATTTATTTATTTATTTTAATCCGTCGATTCATATTCA
TTTTCCCCTTGGAAGCAGTAGAAAGAACAAGGAGAAGCTATGGCCAAGAG
CTCCTTCAAGCTTGAACACCCACTCGAAAGGAGGCAGGCTGAATCTGCCC
GTATCAGGGAGAAGTATCCTGATAGAATACCAGTGATTGTGGAGAAGGCT
GAAAGGAGTGACATACCTGATATTGACAAAAAAAATACCTGGTTCCTGCT
GATCTGACTGTTGGACAATTTGTTTATGTGGTCCGGAAGAGGATAAAGCT
CAGTGCTGAGAAGGCCATATTCATATTTGTCAAGAACATTTTGCCACCCA
CTGCTGCAATGATGTCTGCAATTTATGAGGAAAACAAA
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