DR403235

Overview
NameDR403235
Unique NameDR403235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403235_ssr11 microsatellite DR403235_ssr11:11..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2998 contig Csv1_Contig2998:1061..1449. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_PENCW (Autophagy-related protein 8 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.062e-32
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+K
Sbjct:   46 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHK 99          

HSP 2 Score: 66.2402 bits (160), Expect = 1.062e-32
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KY DRIPVI EK E+SDI  IDKK
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKK 47          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_NEOFI (Autophagy-related protein 8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=atg8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.062e-32
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+K
Sbjct:   46 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHK 99          

HSP 2 Score: 66.2402 bits (160), Expect = 1.062e-32
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KY DRIPVI EK E+SDI  IDKK
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKK 47          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_COCIM (Autophagy-related protein 8 OS=Coccidioides immitis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.062e-32
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+K
Sbjct:   46 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHK 99          

HSP 2 Score: 66.2402 bits (160), Expect = 1.062e-32
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KY DRIPVI EK E+SDI  IDKK
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKK 47          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_ASPTN (Autophagy-related protein 8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=atg8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.062e-32
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+K
Sbjct:   46 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHK 99          

HSP 2 Score: 66.2402 bits (160), Expect = 1.062e-32
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KY DRIPVI EK E+SDI  IDKK
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKK 47          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_ASPOR (Autophagy-related protein 8 OS=Aspergillus oryzae GN=atg8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.062e-32
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+K
Sbjct:   46 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHK 99          

HSP 2 Score: 66.2402 bits (160), Expect = 1.062e-32
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KY DRIPVI EK E+SDI  IDKK
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKK 47          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_ASPNC (Autophagy-related protein 8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=atg8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.062e-32
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+K
Sbjct:   46 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHK 99          

HSP 2 Score: 66.2402 bits (160), Expect = 1.062e-32
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KY DRIPVI EK E+SDI  IDKK
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKK 47          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_ASPFU (Autophagy-related protein 8 OS=Aspergillus fumigatus GN=atg8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.062e-32
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+K
Sbjct:   46 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHK 99          

HSP 2 Score: 66.2402 bits (160), Expect = 1.062e-32
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KY DRIPVI EK E+SDI  IDKK
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKK 47          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_ASPCL (Autophagy-related protein 8 OS=Aspergillus clavatus GN=atg8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.062e-32
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+K
Sbjct:   46 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHK 99          

HSP 2 Score: 66.2402 bits (160), Expect = 1.062e-32
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KY DRIPVI EK E+SDI  IDKK
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKK 47          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_USTMA (Autophagy-related protein 8 OS=Ustilago maydis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.062e-32
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVP+DLTVGQFVYV+RKRIKL+ EKAIFIFV  +LP TAA+MSAIYEE+K
Sbjct:   46 KKKYLVPSDLTVGQFVYVIRKRIKLAPEKAIFIFVDEVLPATAALMSAIYEEHK 99          

HSP 2 Score: 70.4774 bits (171), Expect = 1.062e-32
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S+FK EH  E+R+AE+ RIR+KYPDRIPVI EKA+R+DIP IDKK
Sbjct:    2 RSAFKNEHSFEKRKAEAERIRQKYPDRIPVICEKADRTDIPTIDKK 47          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8_PHANO (Autophagy-related protein 8 OS=Phaeosphaeria nodorum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.384e-32
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            +KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+K
Sbjct:   46 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHK 99          

HSP 2 Score: 65.855 bits (159), Expect = 1.384e-32
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            +S FK EHP E+R+AE+ RIR+KY DRIPVI EK E+SDI  IDKK
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYNDRIPVICEKVEKSDIATIDKK 47          
The following BLAST results are available for this feature:
BLAST of DR403235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ATG8_PENCW1.062e-3283.33Autophagy-related protein 8 OS=Penicillium chrysog... [more]
ATG8_NEOFI1.062e-3283.33Autophagy-related protein 8 OS=Neosartorya fischer... [more]
ATG8_COCIM1.062e-3283.33Autophagy-related protein 8 OS=Coccidioides immiti... [more]
ATG8_ASPTN1.062e-3283.33Autophagy-related protein 8 OS=Aspergillus terreus... [more]
ATG8_ASPOR1.062e-3283.33Autophagy-related protein 8 OS=Aspergillus oryzae ... [more]
ATG8_ASPNC1.062e-3283.33Autophagy-related protein 8 OS=Aspergillus niger (... [more]
ATG8_ASPFU1.062e-3283.33Autophagy-related protein 8 OS=Aspergillus fumigat... [more]
ATG8_ASPCL1.062e-3283.33Autophagy-related protein 8 OS=Aspergillus clavatu... [more]
ATG8_USTMA1.062e-3279.63Autophagy-related protein 8 OS=Ustilago maydis GN=... [more]
ATG8_PHANO1.384e-3283.33Autophagy-related protein 8 OS=Phaeosphaeria nodor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244E11 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403235 ID=DR403235; Name=DR403235; organism=Citrus sinensis; type=EST; length=388bp
GGGGAGTCTTTTTATTTATTTATTTATTTTAATCCGTCGATTCATATTCA
TTTTCCCCTTGGAAGCAGTAGAAAGAACAAGGAGAAGCTATGGCCAAGAG
CTCCTTCAAGCTTGAACACCCACTCGAAAGGAGGCAGGCTGAATCTGCCC
GTATCAGGGAGAAGTATCCTGATAGAATACCAGTGATTGTGGAGAAGGCT
GAAAGGAGTGACATACCTGATATTGACAAAAAAAATACCTGGTTCCTGCT
GATCTGACTGTTGGACAATTTGTTTATGTGGTCCGGAAGAGGATAAAGCT
CAGTGCTGAGAAGGCCATATTCATATTTGTCAAGAACATTTTGCCACCCA
CTGCTGCAATGATGTCTGCAATTTATGAGGAAAACAAA
back to top