DR403235

Overview
NameDR403235
Unique NameDR403235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403235_ssr11 microsatellite DR403235_ssr11:11..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2998 contig Csv1_Contig2998:1061..1449. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.926e-17
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            + KYLVP D+TVG F++++ KR++L   KA+F+FV N LP TA+ M ++Y   K
Sbjct:   49 KNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFK 102          

HSP 2 Score: 46.9802 bits (110), Expect = 3.926e-17
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 3
Query:  102 SFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDK 230
            SFK +   + R  ES  I  KYPDRIPVI+EK   +D+PD++K
Sbjct:    7 SFKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEK 49          
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 8.532e-17
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 3
Query:   87 AMAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            A+   SFK E+ LE+R+  S++IR +Y DR+P+IVE+A  SD+PDI+KK
Sbjct:    2 ALLSKSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKK 50          

HSP 2 Score: 46.9802 bits (110), Expect = 8.532e-17
Identity = 23/58 (39.66%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLS---AEKAIFIFV-KNILPPTAAMMSAIYEENK 388
            +KK+L P+++ +  F+  +RK +  S    +KAIF+FV KN LPP++ ++S+IY+ +K
Sbjct:   49 KKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHK 106          
The following BLAST results are available for this feature:
BLAST of DR403235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ATG8H_ARATH3.926e-1748.15Autophagy-related protein 8h OS=Arabidopsis thalia... [more]
ATG8L_DICDI8.532e-1753.06Autophagy-related protein 8-like protein DDB_G0290... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244E11 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403235 ID=DR403235; Name=DR403235; organism=Citrus sinensis; type=EST; length=388bp
GGGGAGTCTTTTTATTTATTTATTTATTTTAATCCGTCGATTCATATTCA
TTTTCCCCTTGGAAGCAGTAGAAAGAACAAGGAGAAGCTATGGCCAAGAG
CTCCTTCAAGCTTGAACACCCACTCGAAAGGAGGCAGGCTGAATCTGCCC
GTATCAGGGAGAAGTATCCTGATAGAATACCAGTGATTGTGGAGAAGGCT
GAAAGGAGTGACATACCTGATATTGACAAAAAAAATACCTGGTTCCTGCT
GATCTGACTGTTGGACAATTTGTTTATGTGGTCCGGAAGAGGATAAAGCT
CAGTGCTGAGAAGGCCATATTCATATTTGTCAAGAACATTTTGCCACCCA
CTGCTGCAATGATGTCTGCAATTTATGAGGAAAACAAA
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